Gene EcHS_A3527 details

Gene Information

• Locus tag: EcHS_A3527
• Symbol: gspL1
• ID: 5593458
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3508265
• End bp: 3509428
• Gene Length: 1164 bp
• Protein Length: 387 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640922644
• Product: general secretion pathway protein L
• Protein accession: YP_001460125
• Protein GI: 157162807
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3297] Type II secretory pathway, component PulL
• TIGRFAM ID: [TIGR01709] general secretion pathway protein L

Plasmid Coverage information

• Num covering plasmid clones: 49
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGAAT CGTTGATGGT CATACGTTCT TCCTCGACGC TGCGTAAGCA TTGGGAATGG 
ATGACGTTCT CCGCAGATAG CGTATCTTCG GTACATACGC TCACGGACGA TCTTCCGCTG 
GAGTCGCTGG CCGATCAGCC CGGTGCCGGA AATGTTCATC TTTTGATCCC ACCAGAGGGC 
CTTTTATATC GTTCCCTCAC GCTGCCCAAC GCCAAATACA AACTCACCGC ACAAACATTA 
CAATGGCTGG CAGAGGAGAC GTTACCCGAC AACACCCAGG ACTGGCACTG GACGGTTGTC 
GATAAACAAA ACGAAAGTGT CGAGGTGATA GGCATTCAGT CGGAGAAACT CAGTCGCTAT 
CTTGAGCGTT TACATACTGC CGGACTCAAC GTGACGCGGG TTTTGCCAGA TGGCTGCTAT 
CTTCCCTGGG AAGTAGATAG CTGGACTCTG GTTAACCAGC AAACAAGCTG GCTCATTCGC 
AGTACCGCAC ATGCCTTCAA CGAACTGGAT GAACACTGGT TACAGCATCT TGCTGCCCAG 
TTTCCGCCTG AGAATATGCT TTGTTATGGT GTAGTACCTC ACGGCGTTGC AGCGGCCAAT 
CCACTTATCC AGCATCCTGA AATACCATCA CTGAGTTTGT ATTCTGCCGA TATTGCATTC 
CAGCGCTATG ACATGCTGCA TGGTATTTTT CGTAAACAGA AAACTGTAAG CAAATCGGGA 
AAATGGCTCG CCCGCCTGGC AGTAAGCTGT CTCGTTCTCG CCATTCTTTC TTTTGTTGGC 
AGCCGGAGCA TCGCGCTCTG GCATACGCTT AAGATTGAAG ATCAACTTCA GCAACAACAG 
CAAGAAACCT GGCAACGTTA TTTCCCGCAG ATCAAACGCA CCCACAACTT TCATTTTTAC 
TTTAAGCAGC AACTCGCTCA GCAATATCCT GAAGCTGTAC CGTTGCTCTA TCATTTACAA 
ACACTTCTGC TGGAACACCC TGAACTGCAG TTAATGGAGG CGAACTATAG CCAGAAGCAA 
AAGTCGCTGA CCTTAAAAAT GAGTGCTAAG AGTGAAGCCA ATATCGATCG TTTCTGTGAG 
TTAACACAGT CCTGGCTTCC GATGGAAAAA ACAGAAAAAG ATCCGGTCAG TGGTGTATGG 
ACAGTAAGGA ACTCAGGGAA ATGA 

 

Protein sequence

MPESLMVIRS SSTLRKHWEW MTFSADSVSS VHTLTDDLPL ESLADQPGAG NVHLLIPPEG 
LLYRSLTLPN AKYKLTAQTL QWLAEETLPD NTQDWHWTVV DKQNESVEVI GIQSEKLSRY 
LERLHTAGLN VTRVLPDGCY LPWEVDSWTL VNQQTSWLIR STAHAFNELD EHWLQHLAAQ 
FPPENMLCYG VVPHGVAAAN PLIQHPEIPS LSLYSADIAF QRYDMLHGIF RKQKTVSKSG 
KWLARLAVSC LVLAILSFVG SRSIALWHTL KIEDQLQQQQ QETWQRYFPQ IKRTHNFHFY 
FKQQLAQQYP EAVPLLYHLQ TLLLEHPELQ LMEANYSQKQ KSLTLKMSAK SEANIDRFCE 
LTQSWLPMEK TEKDPVSGVW TVRNSGK