| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3520 |
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| Symbol | gspE1 |
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| ID | 5593287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 3502682 |
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| End bp | 3504163 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640922637 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001460118 |
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| Protein GI | 157162800 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 0.189411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATTC ACTCACCGTA CCCCGCCAGT TGGGCGCTGG CACAACGAAT TGGTTATCTC
TATTCAGAGG GCGAGATTAT TTATCTCGCC GATACGCCAT TCGAGCGGTT ACTCGATATT
CAACGTCAGG TTGGTCAGTG CCAGACCATG ACCAGTTTGT CACAGGCTGA TTTCGAAGCC
CGGCTGGAAG CGGTGTTCCA TCAGAATACC GGTGAGTCGC AACAGATTGC GCAGGATATC
GATCAATCCG TCGATCTTCT CTCGCTTTCG GAAGAGATGC CCGCAAATGA AGATCTCCTG
AATGAAGATT CAGCGGCACC GGTTATCCGC TTGATCAATG CGATTTTGAG TGAGGCCATC
AAAGAAACCG CCTCTGATAT CCACATTGAA ACCTATGAAA AAACAATGTC GATCCGTTTT
CGCATCGACG GCGTTTTGCG GACAATTTTA CAGCCAAACA AAAAACTGGC GGCACTGCTT
ATCTCCCGAA TTAAGGTCAT GGCTCGTCTT GATATCGCCG AAAAACGTAT TCCACAGGAT
GGAAGAATTA GTTTGCGTAT CGGGCGACGT AACATAGATG TCCGCGTATC CACACTGCCG
TCCATCTATG GTGAACGCGC CGTACTCCGC CTGCTGGATA AAAACAGCCT CCAGCTTTCA
TTGAACAACC TGGGGATGAC GGCAGCGGAT AAGCAGGATT TAGAAAATCT CATTCAGCTT
CCGCACGGTA TTATCCTGGT GACAGGGCCG ACAGGCTCCG GTAAAAGCAC CACGCTCTAC
GCCATCCTTT CGGCGCTGAA TACTCCCGGC CGCAATATTC TGACGGTAGA AGATCCCGTG
GAATATGAGC TGGAAGGCAT TGGGCAAACG CAGGTGAATA CCCGTGTGGA TATGTCTTTC
GCTCGCGGCC TGCGCGCCAT ACTTCGCCAG GACCCGGATG TCGTCATGGT GGGGGAAATT
CGTGATACAG AAACCGCGCA GATTGCGGTT CAGGCCTCGC TCACCGGCCA TCTGGTACTC
TCAACACTCC ACACTAACAG TGCATCAGGC GCAGTGACCC GGCTCCGCGA CATGGGCGTC
GAATCATTCC TGCTTTCGTC TTCCCTGGCA GGGATTATCG CGCAACGTCT GGTTCGTCGC
CTGTGTCCGC AATGCCGACA ATTCACGCCC GTATCACCCC AACAAGCGCA GATGTTTAAA
TATCATCAGC TCGCGGTGAC AACAATTGGC ACTCCCGTAG GCTGCCCTCA TTGCCATCAA
TCCGGCTATC AGGGGCGCAT GGCGATCCAC GAAATGATGG TGGTGACGCC GGAATTACGG
GCCGCTATTC ATGAAAATGT GGATGAACAA GCACTGGAGC GACTAGTCCG GCAACAACAC
AAGGCCTTAA TCAAAAATGG CCTGCAAAAA GTGATAAGCG GTGACACCTC CTGGGATGAG
GTTATGCGCG TCGCCAGTGC CACGCTGGAG AGCGAAGCAT GA
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| Protein sequence | MRIHSPYPAS WALAQRIGYL YSEGEIIYLA DTPFERLLDI QRQVGQCQTM TSLSQADFEA
RLEAVFHQNT GESQQIAQDI DQSVDLLSLS EEMPANEDLL NEDSAAPVIR LINAILSEAI
KETASDIHIE TYEKTMSIRF RIDGVLRTIL QPNKKLAALL ISRIKVMARL DIAEKRIPQD
GRISLRIGRR NIDVRVSTLP SIYGERAVLR LLDKNSLQLS LNNLGMTAAD KQDLENLIQL
PHGIILVTGP TGSGKSTTLY AILSALNTPG RNILTVEDPV EYELEGIGQT QVNTRVDMSF
ARGLRAILRQ DPDVVMVGEI RDTETAQIAV QASLTGHLVL STLHTNSASG AVTRLRDMGV
ESFLLSSSLA GIIAQRLVRR LCPQCRQFTP VSPQQAQMFK YHQLAVTTIG TPVGCPHCHQ
SGYQGRMAIH EMMVVTPELR AAIHENVDEQ ALERLVRQQH KALIKNGLQK VISGDTSWDE
VMRVASATLE SEA
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