Gene EcHS_A3393 details

Gene Information

• Locus tag: EcHS_A3393
• Symbol: lptA
• ID: 5593103
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 3394307
• End bp: 3394864
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640922513
• Product: lipopolysaccharide transport periplasmic protein LptA
• Protein accession: YP_001460002
• Protein GI: 157162684
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: 66
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTCA AAACAAACAA ACTCAGCCTT AATCTTGTGC TTGCCAGCTC ACTTCTGGCC 
GCCAGCATTC CGGCATTTGC CGTAACCGGA GACACTGATC AGCCGATCCA CATTGAATCG 
GACCAGCAAT CTCTTGATAT GCAAGGCAAC GTGGTTACCT TTACCGGTAA TGTCATCGTC 
ACCCAGGGCA CCATCAAAAT TAATGCCGAC AAAGTGGTCG TTACCCGTCC GGGCGGCGAA 
CAAGGTAAAG AAGTGATTGA CGGCTACGGT AAACCGGCAA CGTTCTACCA GATGCAGGAC 
AACGGTAAAC CCGTTGAAGG TCACGCTTCC CAGATGCACT ACGAACTGGC AAAAGATTTT 
GTCGTTCTGA CGGGTAATGC TTATCTGCAG CAGGTCGATA GCAACATTAA GGGCGATAAG 
ATCACTTACC TGGTGAAAGA GCAGAAAATG CAGGCTTTCA GCGACAAAGG CAAGCGCGTA 
ACCACCGTTC TGGTGCCGTC GCAGCTGCAG GATAAAAACA ACAAAGGCCA GACCCCGGCA 
CAGAAGAAGG GTAATTAA 

 

Protein sequence

MKFKTNKLSL NLVLASSLLA ASIPAFAVTG DTDQPIHIES DQQSLDMQGN VVTFTGNVIV 
TQGTIKINAD KVVVTRPGGE QGKEVIDGYG KPATFYQMQD NGKPVEGHAS QMHYELAKDF 
VVLTGNAYLQ QVDSNIKGDK ITYLVKEQKM QAFSDKGKRV TTVLVPSQLQ DKNNKGQTPA 
QKKGN