| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3331 |
|---|
| Symbol | agaC |
|---|
| ID | 5593958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3335610 |
|---|
| End bp | 3336413 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640922449 |
|---|
| Product | PTS system N-acetylgalactosamine-specific transporter subunit IIC |
|---|
| Protein accession | YP_001459942 |
|---|
| Protein GI | 157162624 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3715] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC |
|---|
| TIGRFAM ID | [TIGR00822] PTS system, mannose/fructose/sorbose family, IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 0.5681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGAAA TAACCCTACT TCAGGGATTA TCCCTGGCGG CGTTAGTTTT TGTTCTGGGG
ATTGATTTTT GGCTGGAAGC CTTATTTTTA TTCCGCCCGA TAATCGTTTG TACCCTAACT
GGCGCTATTC TCGGTGATAT TCAGACTGGC TTAATTACCG GTGGTCTGAC AGAGTTGGCT
TTCGCCGGAT TAACCCCTGC AGGTGGTGTT CAGCCGCCCA ACCCGATTAT GGCGGGTCTG
ATGACCACCG TCATTGCATG GTCTACGGGC GTTGATGCCA AAACAGCAAT TGGTCTTGGC
CTGCCGTTTA GTTTGTTAAT GCAGTACGTC ATTCTGTTCT TCTATTCCGC TTTCTCATTA
TTTATGACCA AAGCCGATAA ATGCGCGAAA GAGGCGGATA CGGCAGCGTT TTCCCGGCTT
AACTGGACAA CGATGCTCAT CGTCGCTTCA GCGTATGCGG TGATTGCTTT CCTCTGTACT
TACCTGGCAC AGGGGGCGAT GCAGGCGCTG GTGAAAGCGA TGCCCGCCTG GCTGACCCAC
GGCTTTGAAG TGGCAGGCGG TATTCTGCCT GCCGTTGGTT TTGGCTTGCT GCTGCGCGTA
ATGTTCAAAG CGCAATATAT CCCTTACCTG ATCGCCGGTT TCCTGTTTGT TTGCTACATC
CAGGTCAGCA ACCTGTTGCC GGTTGCCGTA CTGGGCGCAG GCTTTGCGGT GTATGAGTTT
TTCAATGCGA AATCCCGGCA GCAAGCGCAA CCGCAGCCCG TTGCCAGTAA AAATGAAGAA
GAGGACTACA GCAATGGGAT CTGA
|
|---|
| Protein sequence | MHEITLLQGL SLAALVFVLG IDFWLEALFL FRPIIVCTLT GAILGDIQTG LITGGLTELA
FAGLTPAGGV QPPNPIMAGL MTTVIAWSTG VDAKTAIGLG LPFSLLMQYV ILFFYSAFSL
FMTKADKCAK EADTAAFSRL NWTTMLIVAS AYAVIAFLCT YLAQGAMQAL VKAMPAWLTH
GFEVAGGILP AVGFGLLLRV MFKAQYIPYL IAGFLFVCYI QVSNLLPVAV LGAGFAVYEF
FNAKSRQQAQ PQPVASKNEE EDYSNGI
|
|---|
| |