| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3221 |
|---|
| Symbol | |
|---|
| ID | 5592064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 3230245 |
|---|
| End bp | 3230796 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640922339 |
|---|
| Product | putative fimbrial protein |
|---|
| Protein accession | YP_001459837 |
|---|
| Protein GI | 157162519 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00000000501305 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTT TTAAAAAGTC ACTTCTTGTT GCTGGTGTAG CAATGATTCT TTCCAATAAC
GTGTTTGCTG ATGAAGGTCA CGGTATTGTT AAATTTAAAG GTGAAGTTAT CTCTGCTCCA
TGTTCTATTA AACCAGGTGA CGAAGATTTA ACTGTAAATC TGGGTGAAGT AGCAGATACC
GTACTGAAAA GCGATCAGAA ATCTTTGGCG GAACCTTTCA CTATTCACCT GCAGGACTGC
ATGCTGAGTC AGGGTGGAAC TACTTATTCA AAAGCGAAGG TTACTTTCAC TACAGCAAAT
ACCATGACGG GTCAGTCTGA TCTTCTGAAA AATACCAAAG AAACTGAAAT CGGCGGCGCC
ACTGGTGTTG GCGTACGTAT TCTGGACAGC CAGAGCGGCG AAGTAACTTT AGGTACTCCG
GTAGTAATTA CGTTCAACAA TACCAACAGC TATCAGGAAC TGAATTTCAA AGCTCGTATG
GAATCCCCAA GCAAAGATGC CACCCCGGGC AACGTTTACG CTCAGGCTGA CTACAAGATT
GCTTACGAGT AA
|
|---|
| Protein sequence | MSAFKKSLLV AGVAMILSNN VFADEGHGIV KFKGEVISAP CSIKPGDEDL TVNLGEVADT
VLKSDQKSLA EPFTIHLQDC MLSQGGTTYS KAKVTFTTAN TMTGQSDLLK NTKETEIGGA
TGVGVRILDS QSGEVTLGTP VVITFNNTNS YQELNFKARM ESPSKDATPG NVYAQADYKI
AYE
|
|---|
| |