| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3139 |
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| Symbol | gspC1 |
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| ID | 5593801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 3149011 |
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| End bp | 3149970 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640922258 |
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| Product | putative type II secretion protein GspC |
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| Protein accession | YP_001459757 |
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| Protein GI | 157162439 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 75 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCGCGGG TTGTTTTTCG TGACGCACGA ATTTATCTCA TTCAATGGCT GACAAAAATT
CGTCACACTC TTAACCAGAG ACAATCTCTT AATACAGACA AAGAGCATCT GCGCAAAATT
GCACGCGGGA TGTTCTGGCT GATGCTGCTT ATTATTTCTG CAAAAATGGC GTATTCACTC
TGGCGCTATT TCTCCTTTTC TGCGGAATAT ACGGCTGTTT CCCCATCGGC GAATAAACCG
CCCCGTGCGG ATGCAAAAAC GTTCGATAAA AATGACGTGC AATTAATCAG CCAGCAAAAC
TGGTTTGGCA AATATCAGCC CGTCGCCACG CCGGTAAAAC AACCCGAACC TGTGCCTGTG
GCAGAAACGC GTCTTAATGT GGTGTTGCGT GGGATCGCCT TTGGTGCCAG ACCCGGCGCG
GTTATTGAAG AAGGTGGCAA ACAGCAGGTC TATTTGCAGG GGGAACGGCT TGGTTCTCAC
AACGCGGTGA TTGAGGAAAT CAACCGCGAC CATGTGATGC TGCGCTATCA GGGAAAAATA
GAGCGCCTGA GCCTGGCAGA AGAGGGGCAT TCCACCGTAG CCGTGACCAA CAAAAAAGCC
GTCAGTGACG AAGCAAAGCA AGCTGTTGCT GAGCCTGCTG CCAGTGCGCC AGTTGAGATC
CCGACTGCCG TGCGTCAGGC ACTGACGAAA GATCCGCAGA AAATTTTTAA CTATATCCAG
CTTACGCCTG TGCGTAAGGA GGGGATTGTC GGTTATGCAG TGAAGCCGGG GGCAGATCGT
TCTCTGTTCG ATGCCAGCGG TTTCAAGGAA GGCGATATCG CCATTGCGCT AAATCAGCAG
GATTTCACTG ATCCACGAGC AATGATTGCT CTGATGCGGC AGTTACCTTC AATGGATTCC
ATTCAACTTA CGGTTTTACG CAAGGGTGCG CGCCACGACA TTTCCATCGC GCTGCGCTAA
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| Protein sequence | MARVVFRDAR IYLIQWLTKI RHTLNQRQSL NTDKEHLRKI ARGMFWLMLL IISAKMAYSL
WRYFSFSAEY TAVSPSANKP PRADAKTFDK NDVQLISQQN WFGKYQPVAT PVKQPEPVPV
AETRLNVVLR GIAFGARPGA VIEEGGKQQV YLQGERLGSH NAVIEEINRD HVMLRYQGKI
ERLSLAEEGH STVAVTNKKA VSDEAKQAVA EPAASAPVEI PTAVRQALTK DPQKIFNYIQ
LTPVRKEGIV GYAVKPGADR SLFDASGFKE GDIAIALNQQ DFTDPRAMIA LMRQLPSMDS
IQLTVLRKGA RHDISIALR
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