Gene EcHS_A3132 details

Gene Information

• Locus tag: EcHS_A3132
• Symbol: gspJ2
• ID: 5593644
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 3142196
• End bp: 3142801
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640922251
• Product: general secretion pathway protein J
• Protein accession: YP_001459750
• Protein GI: 157162432
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4795] Type II secretory pathway, component PulJ
• TIGRFAM ID: [TIGR01711] general secretion pathway protein J; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 94
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGAAGGG CTCGCGCTGG TTTCACGTTA CTGGAAATGC TGGTGGCAAT TGCCATTTTT 
GCCTCGCTGG CACTGATGGC GCAGCAGGTG ACTAACGGCG TCACGCGCGT GAATAGCGCC 
GTCGCCGGAC ACGATCAAAA ACTAAACCTC ATGCAGCAAA CGATGAGTTT TCTGACCCAC 
GATCTGACCC AAATGATGCC GCGTCCGGTA AGAGGCGATC AGGGCCAGCG TGAACCAGCG 
TTACTGGCTG GCGCTGGCGT GCTGGCGTCT GAGAGTGAAG GAATGCGTTT TGTGCGCGGC 
GGTGTGGTTA ACCCGTTGAT GCGTATGCCA CGCAGCAATC TGCTCACCGT CGGTTACCGC 
ATTCATGACG GTTATCTCGA ACGGTTGTCC TGGCCGCTGA CCGATGCCGC AGGCAGCGTG 
AAGCCGACAA TGCAAAAGTT GATTCCGGCC GATTCGCTCC ATTTGCAGTT CTACGACGGC 
ACGCGCTGGC AGGAGAGCTG GTCGTCAGTA CAGGCGATCC CTGTGGCAGT GCGCATGACT 
CTGCATTCGC CGCAATGGGG CGAGATTGAA CGCATCTGGT TGTTACGCGG GCCGCAATTA 
TCATGA 

 

Protein sequence

MRRARAGFTL LEMLVAIAIF ASLALMAQQV TNGVTRVNSA VAGHDQKLNL MQQTMSFLTH 
DLTQMMPRPV RGDQGQREPA LLAGAGVLAS ESEGMRFVRG GVVNPLMRMP RSNLLTVGYR 
IHDGYLERLS WPLTDAAGSV KPTMQKLIPA DSLHLQFYDG TRWQESWSSV QAIPVAVRMT 
LHSPQWGEIE RIWLLRGPQL S