| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3018 |
|---|
| Symbol | spaP |
|---|
| ID | 5593754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 3021684 |
|---|
| End bp | 3022349 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640922135 |
|---|
| Product | surface presentation of antigens protein SpaP |
|---|
| Protein accession | YP_001459638 |
|---|
| Protein GI | 157162320 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4790] Type III secretory pathway, component EscR |
|---|
| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.000294299 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAATA GCATTTCGCT GATAGCTATA CTATCATTAT TTACACTATT GCCGTTTATA
ATAGCATCCG GGACATATTT TATTAAATTC TCGATTGTTT TTGTTATTGT CCGAAACGCG
CTGGGGCTTC AGCAAGTGCC ATCAAATATG ACACTTAATG GGGTTGCTTT GCTATTGTCA
ATGTTTGTAA TGATGCCGGT TGGGAAGGAA ATATATTATA ACAGTCAGAA TGAGAATCTT
TCATTCAATA ATTTAGCGTC GGTTGTTAAT TTTGTTGAGA CAGGCATGAG TGGTTATAAA
TCATATTTGA TAAAATATTC CGAACCGGAG TTGGTTAACT TTTTTGAAAA GATTCAGAAG
GTGAATAGCT CTGAAGACAA TGAAGAGATA TTCGATGATG ATAATATTTC AATTTTCTCG
TTACTCCCGG CATATGCGTT GAGTGAGATA AAAAGTGCAT TTATTATAGG TTTTTATATC
TATTTACCCT TTGTTGTAGT GGATCTGGTT ATATCCATCG TTCTGTTAAC GTTAGGTATG
ATGATGATGA GTCCGGTAAC CATATCTACA CCGATAAAAT TAATTTTGTT TGTCGCGATG
GACGGTTGGA CAATGTTATC AAAAGGACTC ATTTTACAAT ATTTTGACCT ATCCATTAAT
CCCTGA
|
|---|
| Protein sequence | MSNSISLIAI LSLFTLLPFI IASGTYFIKF SIVFVIVRNA LGLQQVPSNM TLNGVALLLS
MFVMMPVGKE IYYNSQNENL SFNNLASVVN FVETGMSGYK SYLIKYSEPE LVNFFEKIQK
VNSSEDNEEI FDDDNISIFS LLPAYALSEI KSAFIIGFYI YLPFVVVDLV ISIVLLTLGM
MMMSPVTIST PIKLILFVAM DGWTMLSKGL ILQYFDLSIN P
|
|---|
| |