Gene EcHS_A2546 details

Gene Information

• Locus tag: EcHS_A2546
• Symbol: ligA
• ID: 5593256
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 2555725
• End bp: 2557740
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640921667
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001459194
• Protein GI: 157161876
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 6.01558e-16
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATCAA TCGAACAACA ACTGACAGAA CTGCGAACGA CGCTTCGCCA TCATGAATAT 
CTTTATCATG TGATGGATGC GCCGGAAATT CCCGACGCTG AATACGACAG GCTGATGCGC 
GAACTGCGCG AGCTGGAAAC CAAACATCCA GAACTGATTA CGCCTGATTC GCCTACCCAA 
CGTGTAGGTG CTGCGCCGCT GGCGGCTTTC AGCCAGATTC GCCATGAAGT GCCAATGCTG 
TCGCTGGATA ACGTTTTTGA TGAAGAAAGC TTTCTTGCCT TCAACAAACG AGTGCAGGAC 
CGTCTGAAAA GCAACGAGAA AGTCACCTGG TGCTGTGAGC TGAAGCTGGA TGGCCTTGCT 
GTCAGTATTC TGTATGAAAA TGGCGTTTTA GTCAGTGCCG CGACCCGTGG CGATGGCACC 
ACCGGGGAAG ATATCACGTC TAACGTGCGT ACCATTCGCG CCATTCCACT GAAGCTACAC 
GGAGAGAATA TCCCGGCGCG TCTGGAAGTG CGTGGTGAAG TGTTCCTGCC GCAGGCGGGG 
TTCGAAAAGA TTAACGAAGA TGCGCGACGC ACGGGCGGGA AAGTTTTTGC TAACCCACGT 
AATGCGGCAG CTGGTTCACT GCGTCAGCTT GATCCGCGTA TTACAGCGAA GCGACCGCTC 
ACTTTTTTCT GCTATGGCGT TGGTGTTCTG GAAGGTGGCG AGCTGCCGGA TACTCATCTT 
GGCCGTTTAC TGCAATTTAA ACAGTGGGGG TTGCCGGTCA GCGATCGGGT AACGCTTTGT 
GAATCGGCGG AAGAAGTGCT GGCGTTCTAT CACAAAGTGG AAGAAGACCG CCCGACGCTG 
GGCTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCAC TGGCACAGCA GGAGCAGCTT 
GGCTTTGTCG CGCGTGCCCC GCGCTGGGCG GTAGCGTTTA AATTCCCGGC GCAGGAGCAG 
ATGACCTTTG TGCGTGACGT CGAGTTTCAG GTTGGGCGTA CTGGCGCGAT TACGCCTGTT 
GCGCGTCTGG AACCTGTCCA TGTTGCAGGC GTGCTGGTGA GTAACGCAAC CTTACACAAT 
GCGGATGAAA TCGAACGTCT TGGTTTACGC ATTGGCGATA AAGTGGTGAT TCGCCGCGCT 
GGCGACGTGA TCCCGCAGGT GGTTAACGTC GTGCTTTCTG AACGCCCGGA AGATACCCGT 
GAGGTTGTAT TCCCGACGCA TTGTCCGGTA TGTGGTTCTG ACGTTGAGCG TGTGGAAGGT 
GAAGCGGTTG CCCGCTGTAC CGGTGGCCTG ATTTGCGGTG CGCAGCGTAA AGAGTCGCTG 
AAACACTTTG TTTCCCGCCG TGCGATGGAT GTTGACGGAA TGGGCGACAA AATCATCGAT 
CAGCTGGTTG AAAAAGAATA TGTCCATACT CCGGCAGATC TGTTCAAACT CACCGCAGGC 
AAACTGACCG GACTGGAGCG TATGGGGCCA AAATCGGCAC AAAACGTGGT TAACGCGCTG 
GAAAAAGCGA AAGAAACCAC CTTTGCTCGC TTCCTCTATG CACTTGGCAT CCGTGAAGTC 
GGCGAGGCCA CCGCAGCAGG TCTGGCGGCA TATTTCGGCA CGCTGGAAGC GCTGGAAGCC 
GCTTCGATTG AAGAGCTGCA AAAGGTGCCT GATGTTGGCA TTGTCGTTGC ATCCCACGTT 
CACAACTTCT TTGCCGAAGA AAGCAACCGC AATGTCATCA GCGAGCTGTT GGCGGAAGGT 
GTTCACTGGC CTGCGCCGAT CGTTATCAAC GCGGAAGAGA TTGACAGCCC GTTTGCTGGT 
AAAACCGTGG TGCTTACGGG CAGCTTAAGC CAGATGTCGC GTGATGACGC TAAAGCTCGA 
CTGGTCGAAC TGGGCGCGAA AGTCGCGGGC AGCGTGTCGA AGAAAACCGA TCTGGTGATA 
GCGGGTGAAG CTGCAGGATC TAAACTGGCG AAGGCGCAGG AACTGGGCAT TGAAGTCATC 
GACGAAGCGG AAATGCTGCG TTTGCTGGGT AGCTGA 

 

Protein sequence

MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ 
RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSNEKVTW CCELKLDGLA 
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG 
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL 
GRLLQFKQWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLAQQEQL 
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN 
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG 
EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG 
KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA 
ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPAPIVIN AEEIDSPFAG 
KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI 
DEAEMLRLLG S