Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A2226 |
Symbol | gatR |
ID | 5592858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 2213305 |
End bp | 2214078 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640921356 |
Product | galactitol utilization operon repressor |
Protein accession | YP_001458892 |
Protein GI | 157161574 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCAT TCGAGCGAAG GAATAAGATC ATCCAATTAG TGAATGAACA GGGAACCGTG CTTGTTCAGG ATCTGGCGGG AGTATTTGCT GCCTCGGAAG CGACAATCCG TGCCGATTTG CGCTTTCTCG AACAAAAAGG CGTGGTTACG CGCTTTCATG GCGGTGCGGC GAAAATAATG TCTGGTAATA GTGAAACCGA GACCCAGGAA GTCGGGTTTA AAGAGCGATT TCAGCTCGCC AGCGCGCCAA AAAACAGAAT AGCGCAGGCG GCAGTCAAAA TGATCCACGA AGGGATGACC GTTATTCTCG ACAGCGGAAG TACGACAATG CTTATCGCCG AAGGATTAAT GACCGCCAAA AATATCACGG TGATTACCAA CAGTCTCCCG GCAGCGTTTG CCCTTTCCGA AAATAAAGAC ATTACTCTGG TCGTCTGTGG TGGCACGGTC CGCCATAAAA CGCGCTCGAT GCATGGTTCC ATTGCCGAGC GTTCATTACA GGATATTAAT GCCGATTTAA TGTTTGTCGG TGCTGATGGT ATTGATGCGG TTAATGGTAT TACGACCTTT AATGAAGGTT ATTCTATTAG CGGTGCGATG GTCACAGCCG CTAATAAAGT GATTGCCGTT CTCGATTCAT CGAAATTTAA CCGTCGCGGT TTTAATCAGG TACTACCAAT CGAAAAAATT GACATTATTA TTACCGATGA TGCTGTGTCA GAGGTGGATA AACTGGCATT GCAGAAGACG CGGGTAAAAT TAATTACGGT GTAG
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Protein sequence | MNSFERRNKI IQLVNEQGTV LVQDLAGVFA ASEATIRADL RFLEQKGVVT RFHGGAAKIM SGNSETETQE VGFKERFQLA SAPKNRIAQA AVKMIHEGMT VILDSGSTTM LIAEGLMTAK NITVITNSLP AAFALSENKD ITLVVCGGTV RHKTRSMHGS IAERSLQDIN ADLMFVGADG IDAVNGITTF NEGYSISGAM VTAANKVIAV LDSSKFNRRG FNQVLPIEKI DIIITDDAVS EVDKLALQKT RVKLITV
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