Gene EcHS_A2062 details

Gene Information

• Locus tag: EcHS_A2062
• Symbol: vsr
• ID: 5594135
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 2050255
• End bp: 2050725
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640921203
• Product: very short patch repair protein
• Protein accession: YP_001458747
• Protein GI: 157161429
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3727] DNA G:T-mismatch repair endonuclease
• TIGRFAM ID: [TIGR00632] DNA mismatch endonuclease Vsr

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.00234153
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGACG TTCACGATAA GGCCACTCGC AGCAAAAATA TGCGCGCGAT TGCCACGCGT 
GATACGGCGA TAGAGAAGCG CCTCGCCAGT CTGTTAACCG GGCAGGGCCT GGCATTTCGC 
GTTCAGGACG CCAGTCTGCC CGGACGTCCG GATTTTGTCG TTGATGAATA TCGTTGCGTG 
ATATTTACCC ACGGCTGCTT CTGGCACCAT CATCACTGCT ATCTGTTTAA AGTGCCTGCG 
ACTCGAACCG AGTTCTGGCT GGAGAAGATA AGTAAAAATG TTGAACGCGA TCGCCGCGAT 
ATCAGTCGTT TGCAGGAACT CGGCTGGCGC GTATTGATTG TCTGGGAGTG TGCATTACGT 
GGGCGCGAGA AGCTGACGGA TGAAGCGCTT ACCGAGCGTC TGGAAGAGTG GATCTGCGGC 
GAAGGTGCCA GCGCGCAGAT CGACACGCAG GGGATTCATT TACTCGCTTG A 

 

Protein sequence

MADVHDKATR SKNMRAIATR DTAIEKRLAS LLTGQGLAFR VQDASLPGRP DFVVDEYRCV 
IFTHGCFWHH HHCYLFKVPA TRTEFWLEKI SKNVERDRRD ISRLQELGWR VLIVWECALR 
GREKLTDEAL TERLEEWICG EGASAQIDTQ GIHLLA