Gene EcHS_A1740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A1740 
Symbol 
ID5593840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp1761935 
End bp1763146 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content53% 
IMG OID640920888 
Productinner membrane transport protein YdhC 
Protein accessionYP_001458444 
Protein GI157161126 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.41176e-17 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCTG GGAAAAGATT TTTAGTCTGG CTGGCGGGTT TGAGCGTACT CGGTTTTCTG 
GCAACCGATA TGTATCTGCC TGCTTTCGCC GCCATACAGG CCGACCTGCA AACGCCTGCG
TCTGCTGTCA GTGCCAGCCT TAGTCTGTTC CTTGCCGGTT TTGCCGCAGC CCAGCTTCTG
TGGGGGCCAC TCTCCGACCG TTATGGTCGT AAACCGGTGT TATTAATCGG CCTGACAATT
TTTGCGTTAG GTAGTCTGGG GATGCTGTGG GTAGAAAACG CCGCTACGCT GCTGGTATTG
CGTTTTGTAC AGGCTGTGGG GGTCTGCGCC GCGGCGGTTA TCTGGCAAGC GTTAGTGACG
GATTATTATC CTTCACAGAA AGTCAACCGT ATTTTTGCGA CCATCATGCC GCTGGTGGGT
CTGTCTCCGG CACTTGCTCC CCTGTTAGGA AGCTGGCTGC TGGTCCATTT TTCCTGGCAG
GCGATTTTCG CCACCCTGTT TGCCATTACC GTGGTGCTGA TTCTGCCTAT TTTCTGGCTC
AAACCCACGA CGAAGGCCCG TAACAATAGT CAGGATGGTC TGACCTTTAC CGACCTGCTA
CGTTCTAAAA CCTATCGCGG CAACGTGCTG ATATATGCGG CCTGTTCAGC CAGTTTTTTT
GCATGGCTGA CCGGTTCACC GTTCATCCTT AGTGAAATGG GCTACAGCCC GGCAGTTATT
GGTTTAAGTT ATGTCCCGCA AACTATCGCG TTTCTGATTG GTGGTTATGG CTGTCGCGCC
GCACTGCAGA AATGGCAAGG CAAGCAGTTA TTACCGTGGT TGCTGGTGCT GTTTGCTGTC
AGCGTCATTG CGACCTGGGC TGCAGGCTTC ATTAGCCATG TGTCGCTGGT CGAAATCCTG
ATCCCATTCT GTGTGATGGC GATTGCCAAT GGCGCAATCT ACCCTATTGT TGTCGCCCAG
GCGCTGCGTC CCTTCCCACA CGCAACTGGT CGCGCCGCAG CTTTGCAGAA CACTCTACAA
CTGGGTCTGT GCTTCCTCGC AAGTCTGGTA GTTTCCTGGC TGATCAGTAT CAGCACGCCA
TTGCTCACCA CCACCAGCGT GATGTTATCA ACAGTAGTGC TGGTCGCGCT GGGTTACATG
ATGCAACGTT GTGAAGAAGT TGGCTGCCAG AATCATGGCA ATGCCGAAGT CGCTCATAGC
GAATCACACT GA
 
Protein sequence
MQPGKRFLVW LAGLSVLGFL ATDMYLPAFA AIQADLQTPA SAVSASLSLF LAGFAAAQLL 
WGPLSDRYGR KPVLLIGLTI FALGSLGMLW VENAATLLVL RFVQAVGVCA AAVIWQALVT
DYYPSQKVNR IFATIMPLVG LSPALAPLLG SWLLVHFSWQ AIFATLFAIT VVLILPIFWL
KPTTKARNNS QDGLTFTDLL RSKTYRGNVL IYAACSASFF AWLTGSPFIL SEMGYSPAVI
GLSYVPQTIA FLIGGYGCRA ALQKWQGKQL LPWLLVLFAV SVIATWAAGF ISHVSLVEIL
IPFCVMAIAN GAIYPIVVAQ ALRPFPHATG RAAALQNTLQ LGLCFLASLV VSWLISISTP
LLTTTSVMLS TVVLVALGYM MQRCEEVGCQ NHGNAEVAHS ESH