| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1705 |
|---|
| Symbol | rnfC |
|---|
| ID | 5595515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 1728872 |
|---|
| End bp | 1731094 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640920853 |
|---|
| Product | electron transport complex protein RnfC |
|---|
| Protein accession | YP_001458409 |
|---|
| Protein GI | 157161091 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
|---|
| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.0365167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGT TATTCTCTGC ATTCAGAAAA AATAAAATCT GGGATTTCAA CGGCGGCATC
CATCCACCGG AGATGAAAAC CCAGTCCAAC GGTACACCCC TGCGCCAGGT ACCCCTGGCG
CAGCGTTTTG TTATTCCACT GAAACAGCAT ATTGGCGCTG AAGGTGAGTT GTGCGTTAGC
GTCGGCGATA AAGTATTGCG CGGCCAGCCG CTTACCCGTG GTCGCGGCAA AATGCTGCCT
GTTCACGCGC CCACCTCGGG TACCGTTACG GCTATTGCGC CCCACTCTAC GGCTCATCCT
TCAGCTTTAG CTGAATTAAG CGTGATTATT GATGCCGATG GTGAAGACTG CTGGATCCCG
CGCGACGGCT GGGCCGATTA TCGCACTCGC AGTCGCGAAG AGTTAATCGA GCGCATACAT
CAGTTTGGTG TTGCCGGGCT GGGCGGTGCA GGATTCCCGA CAGGCGTTAA ATTGCAGGGT
GGCGGAGATA AGATTGAAAC GTTGATTATC AACGCGGCTG AGTGCGAGCC GTACATTACC
GCCGATGACC GTTTGATGCA GGATTGCGCG GCTCAGGTCG TAGAGGGTAT TCGCATTCTT
GCGCATATTC TGCAGCCACG CGAAATTCTT ATCGGCATTG AAGATAACAA ACCGCAGGCG
ATTTCCATGC TGCGCGCGGT GCTGGCGGAC TCTAACGATA TTTCTCTGCG GGTGATTCCA
ACCAAATATC CTTCTGGCGG TGCTAAACAA TTAACCTACA TTCTGACCGG GAAGCAGGTT
CCACATGGCG GGCGTTCATC CGATATCGGC GTATTAATGC AAAACGTCGG CACTGCTTAT
GCAGTGAAAC GTGCCGTTAT TGATGGCGAG CCGATTACCG AGCGTGTTGT AACCCTGACT
GGCGAAGCAA TCGCTCGCCC GGGCAACGTC TGGGCACGGC TGGGGACGCC AGTGCGTCAT
TTATTGAATG ATGCCGGATT CTGCCCCTCT GCCGATCAAA TGGTGATTAT GGGTGGCCCG
CTAATGGGCT TTACCTTGCC ATGGCTGGAT GTCCCGGTCG TAAAGATTAC CAACTGTCTG
TTGGCTCCCT CTGCCAATGA ACTTGGCGAA CCACAGGAAG AACAAAGCTG CATCCGGTGT
AGCGCCTGTG CTGACGCCTG CCCTGCGGAT CTTTTGCCGC AACAGTTGTA CTGGTTCAGC
AAAGGTCAGC AACACGATAA AGCTACCACG CATAACATTG CTGATTGCAT TGAATGTGGG
GCTTGCGCGT GGGTTTGCCC GAGCAATATT CCCCTGGTGC AATATTTCCG TCAGGAAAAA
GCTGAAATTG CGGCTATTCG TCAGGAAGAA AAGCGCGCCG CAGAAGCCAA AGCGCGTTTC
GAAGCGCGCC AGGCTCGTCT GGAGCGCGAA AAAGCGGCTC GCCTTGAACG ACATAAGAGC
GCAGCCGTTC AACCTGCAGC CAAAGATAAA GATGCGATTG CTGCCGCTCT GGCGCGGGTG
AAAGAGAAAC AGGCCCAGGC TACACAGCCT ATTGTGATTA AAGCGGGCGA ACGCCCGGAT
AACAGTGCAA TTATTGCAGC ACGGGAAGCC CGTAAAGCGC AAGCCAGAGC GAAACAGGCA
GAACTGCAGC AAACTAACGA CGCAGCAACC GTTGCTGATC CACGTAAAAC TGCCGTTGAA
GCAGCTATCG CCCGCGCCAA AGCGCGCAAG CTGGAACAGC AACAGGCTAA TGCGGAACCA
GAACAACAGG TCGATCCGCG CAAAGCCGCC GTCGAAGCCG CTATTGCCCG TGCCAAAGCG
CGCAAGCTGG AACAGCAACA GGCTAATGCG AAACCAGAAG AACAGGTCGA TCCGCGCAAA
GCCGCCGTCG AAGCCGCTAT TGCCCGTGCC AAAGCGCGCA AGCTGGAACA GCAACAGGCT
AATGCGGAAC CAGAAGAACA GGTTGATCCG CGCAAAGCCG CCGTCGAAGC CGCTATTGCC
CGAGCCAAAG CGCGCAAACT GGAACAGCAA CAGGCTAATG CGGAACCAGA AGAACAGGTT
GATCCGCGCA AAGCCGCCGT CGAAGCCGCT ATTGCCCGTG CCAAAGCGCG CAAGCTGGAA
CAGCAACAGA CTAACGCAGA ACCAGAAGAA CAGGTTGATC CGCGCAAAGC GGCAGTTGCC
GCGGCTATTG CCCGCGCTCA GGCCAAAAAA GCCGCCCAGC AGAAGGTTGT AAACGAGGAC
TAA
|
|---|
| Protein sequence | MLKLFSAFRK NKIWDFNGGI HPPEMKTQSN GTPLRQVPLA QRFVIPLKQH IGAEGELCVS
VGDKVLRGQP LTRGRGKMLP VHAPTSGTVT AIAPHSTAHP SALAELSVII DADGEDCWIP
RDGWADYRTR SREELIERIH QFGVAGLGGA GFPTGVKLQG GGDKIETLII NAAECEPYIT
ADDRLMQDCA AQVVEGIRIL AHILQPREIL IGIEDNKPQA ISMLRAVLAD SNDISLRVIP
TKYPSGGAKQ LTYILTGKQV PHGGRSSDIG VLMQNVGTAY AVKRAVIDGE PITERVVTLT
GEAIARPGNV WARLGTPVRH LLNDAGFCPS ADQMVIMGGP LMGFTLPWLD VPVVKITNCL
LAPSANELGE PQEEQSCIRC SACADACPAD LLPQQLYWFS KGQQHDKATT HNIADCIECG
ACAWVCPSNI PLVQYFRQEK AEIAAIRQEE KRAAEAKARF EARQARLERE KAARLERHKS
AAVQPAAKDK DAIAAALARV KEKQAQATQP IVIKAGERPD NSAIIAAREA RKAQARAKQA
ELQQTNDAAT VADPRKTAVE AAIARAKARK LEQQQANAEP EQQVDPRKAA VEAAIARAKA
RKLEQQQANA KPEEQVDPRK AAVEAAIARA KARKLEQQQA NAEPEEQVDP RKAAVEAAIA
RAKARKLEQQ QANAEPEEQV DPRKAAVEAA IARAKARKLE QQQTNAEPEE QVDPRKAAVA
AAIARAQAKK AAQQKVVNED
|
|---|
| |