| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1575 |
|---|
| Symbol | |
|---|
| ID | 5595150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 1582570 |
|---|
| End bp | 1583952 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640920728 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001458284 |
|---|
| Protein GI | 157160966 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 63 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATGT ATTTTAAAAG AATGAAAGAT GAGTGGACCG GACTTGTCGA ACAGGCAGAT
CCGCCCATTC GTGCTAAAGC CGCGGAAATT GCCGTTGCGC ATGCTCATTA TCTGAGTATT
GAGTTTTATC GAATTGTCCG CATCGACCCG CATGCCGAAG AATTCTTGAG TAATGAACAA
GTTGAGCGGC AGTTGAAAAG TGCGATGGAG CGCTGGATTA TTAACGTGCT TTCTGCCCAG
GTTGACGATG TCGAAAGGCT AATACAAATC CAGCATACCG TCGCGGAAGT GCATGCCCGC
ATAGGAATTC CGGTAGAAAT TGTCGAGATG GGGTTTCGGG TGCTGAAAAA AATCCTCTAT
CCGGTAATCT TCTCTTCGGA TTATTCTGCC GCAGAAAAAC TTCAGGTCTA CCATTTCTCG
ATTAACAGTA TTGATATCGC TATGGAAGTG ATGACCCGCG CGTTTACCTT TAGTGACAGT
AGTGCCTCAA AGGAAGATGA AAACTATCGT ATCTTCTCGT TACTGGAAAA CGCCGAAGAA
GAAAAAGAAC GGCAAATAGC CTCAATACTT TCATGGGAAA TAGATATTAT CTATAAAGTC
CTGCTGGATT CTGATTTAGG CAGTAGTTTG CCTTTAAGCC AGGCTGATTT TGGCCTGTGG
TTTAACCATA AAGGTCGACA TTATTTTAGC GGCATTGCCG AAGTGGGCCA TATCTCCCGT
CTGATTCAGG ATTTCGACGG TATTTTCAAT CAAACCATGC GTAACACCAG GAATTTGAAT
AACAGAAGTC TGCGGGTGAA ATTTTTATTA CAGATAAGAA ATACCGTATC GCAAATTATT
ACCTTGCTGC GTGAATTGTT TGAAGAAGTA TCGCGCCACG AAGTCGGTAT GGATGTACTG
ACGAAATTAC TTAACCGCCG TTTCCTGCCG ACTATCTTCA AACGCGAAAT TGCCCATGCC
AACCGGACCG GTACACCGCT GTCAGTGCTG ATTATTGACG TTGATAAATT CAAAGAGATC
AACGATACGT GGGGCCATAA CACTGGCGAT GAAATTCTGC GTAAAGTCTC TCAGGCCTTT
TATGACAACG TCCGCAGTAG TGATTATGTT TTCCGCTACG GGGGCGATGA ATTTATCATT
GTATTGACTG AAGCTTCTGA AAACGAAACG TTACGTACCG CAGAACGTAT TCGCAGTCGG
GTGGAGAAAA CCAAACTGAA AGCCGCAAAC GGCGAGGATA TTGCCCTCTC ACTTTCCATC
GGTGCCGCCA TGTTTAATGG TCATCCTGAC TATGAGCGCC TCATTCAAAT AGCCGATGAA
GCTCTGTATA TCGCCAAAAG ACGAGGTAGA AACCGTGTTG AACTCTGGAA AGCCAGTCTT
TAG
|
|---|
| Protein sequence | MEMYFKRMKD EWTGLVEQAD PPIRAKAAEI AVAHAHYLSI EFYRIVRIDP HAEEFLSNEQ
VERQLKSAME RWIINVLSAQ VDDVERLIQI QHTVAEVHAR IGIPVEIVEM GFRVLKKILY
PVIFSSDYSA AEKLQVYHFS INSIDIAMEV MTRAFTFSDS SASKEDENYR IFSLLENAEE
EKERQIASIL SWEIDIIYKV LLDSDLGSSL PLSQADFGLW FNHKGRHYFS GIAEVGHISR
LIQDFDGIFN QTMRNTRNLN NRSLRVKFLL QIRNTVSQII TLLRELFEEV SRHEVGMDVL
TKLLNRRFLP TIFKREIAHA NRTGTPLSVL IIDVDKFKEI NDTWGHNTGD EILRKVSQAF
YDNVRSSDYV FRYGGDEFII VLTEASENET LRTAERIRSR VEKTKLKAAN GEDIALSLSI
GAAMFNGHPD YERLIQIADE ALYIAKRRGR NRVELWKASL
|
|---|
| |