Gene EcHS_A1574 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A1574 
Symboldos 
ID5595149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp1580146 
End bp1582569 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content50% 
IMG OID640920727 
ProductcAMP phosphodiesterase 
Protein accessionYP_001458283 
Protein GI157160965 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCAGG ATGCAGAGGT AATCATGAAG CTAACCGATG CGGAAAATGC CGCCGATGGC 
ATTTTTTTCC CCGCCCTTGA ACAAAATATG ATGGGCGCGG TGTTAATTAA CGAAAATGAT
GAAGTGATGT TTTTCAACCC CGCCGCAGAG AAGCTCTGGG GATACAAACG TGAAGAAGTC
ATTGGCAATA ACATTGATAT GCTGATTCCG CGGGATTTGC GTCCTGCGCA TCCTGAATAC
ATTCGTCATA ACCGTGAAGG CGGTAAAGCG CGTGTTGAGG GGATGAGTCG GGAGCTGCAG
CTGGAGAAAA AAGACGGCAG TAAAATCTGG ACCCGTTTTG CGCTATCGAA AGTGAGCGCC
GAGGGGAAAG TTTATTACCT GGCGCTGGTA CGGGATGCCA GCGTAGAAAT GGCGCAAAAA
GAACAGACCC GACAATTGAT TATTGCCGTT GACCATCTCG ACCGACCGGT GATTGTCCTC
GATCCGGAAC GCCATATTGT GCAGTGCAAT CGCGCATTTA CCGAAATGTT TGGTTACTGC
ATTAGCGAAG CCAGCGGTAT GCAGCCCGAT ACACTCCTGA ACATTCCTGA ATTCCCTGCC
GATAACCGCA TTCGTTTACA ACAGTTGCTA TGGAAAACCG CCCGCGATCA GGACGAATTT
CTGCTGTTGA CGCGCACCGG TGAAAAAATC TGGATTAAAG CCTCTATCAG CCCGGTTTAT
GACGTGCTCG CGCATCTGCA GAACCTGGTA ATGACTTTCT CGGATATCAC CGAAGAACGG
CAGATTCGCC AGCTTGAAGG CAATATTCTC GCCGCCATGT GCAGCAGCCC GCCATTTCAT
GAAATGGGGG AAATCATTTG TCGTAACATC GAATCTGTAC TCAACGAATC GCATGTTTCG
CTGTTCGCAC AGCGCAACGG GATGCCGATA CACTGGGCGT CATCTTCCCA CGGTGCAGAA
ATTCAAAATG CGCAAAGCTG GTCAGCGACC ATTCGTCAGC GTGATGGCGC GCCTGCGGGG
ATCCTGCAAA TTAAAACCTC GTCAGGAGCA GAAACCAGCG CCTTTATCGA ACGCGTGGCA
GATATCAGCC AGCATATGGC CGCGCTGGCG CTGGAACAGG AAAAAAGCCG TCAGCATATT
GAACAACTCA TCCAATTTGA TCCGATGACC GGTCTGCCAA ATCGCAATAA CCTGCACAAT
TACCTCGATG ACCTGGTCGA CAAAGCCGTC TCTCCCGTGG TGTATCTCAT CGGTGTTGAC
CATATTCAGG ATGTGATTGA TAGCCTTGGC TATGCGTGGG CCGATCAGGC ATTGCTGGAA
GTGGTCAATC GCTTTCGTGA AAAACTCAAA CCGGATCAGT ATCTCTGTCG TATCGAAGGT
ACGCAGTTTG TCCTCGTGAG CCTCGAAAAC GACGTCAGTA ACATTACCCA AATCGCCGAT
GAGCTACGGA ATGTGGTCAG CAAGCCGATA ATGATTGACG ATAAACCCTT CCCGCTTACC
TTGAGTATTG GCATCAGCTA CGACGTGGGT AAAAACCGCG ATTACTTGCT CTCCACTGCT
CACAATGCAA TGGATTATAT TCGCAAGAAT GGCGGTAACG GCTGGCAGTT CTTCAGCCCG
GCGATGAACG AAATGGTAAA AGAGCGTTTG GTTTTAGGCG CAGCGCTGAA AGAAGCGATT
AGCAATAACC AACTGAAACT GGTTTACCAG CCGCAAATCT TCGCAGAAAC GGGTGAACTG
TACGGCATCG AAGCCCTTGC TCGCTGGCAC GATCCCCTGC ATGGTCATGT GCCCCCTTCA
CGGTTTATTC CTCTCGCAGA AGAGATTGGT GAAATCGAAA ATATTGGGCG CTGGGTCATC
GCGGAAGCTT GCCGTCAGTT AGCAGAATGG CGTAGCCAGA ATATTCATAT CCCGGCGTTA
TCCGTGAACT TGTCGGCGCT GCACTTTCGC AGTAATCAAC TGCCTTATCA GGTGTCTGAT
GCAATGCACG CCTGGGGTAT TGACGGCCAC CAGCTGACGG TAGAAATCAC GGAAAGCATG
ATGATGGAAC ACGATACCGA AATCTTTAAG CGCATTCAGA TCCTGCGTGA TATGGGCGTG
GGCTTATCGG TAGATGATTT TGGTACGGGC TTTTCCGGAT TATCCCGCTT AGTCAGTCTT
CCGGTAACGG AAATCAAAAT TGACAAAAGT TTTGTCGATC GTTGTCTGAC CGAAAAACGC
ATCCTTGCCT TACTTGAAGC CATTACCAGC ATTGGGCAAA GCCTCAATTT AACCGTCGTG
GCGGAAGGCG TCGAAACCAA AGAGCAATTT GAGATGCTAC GCAAGATCCA CTGTCGCGTT
ATTCAGGGAT ATTTCTTTTC CCGCCCCCTA CCCGCCGAAG AAATTCCAGG CTGGATGAGC
AGCGTGTTAC CGCTGAAAAT CTGA
 
Protein sequence
MRQDAEVIMK LTDAENAADG IFFPALEQNM MGAVLINEND EVMFFNPAAE KLWGYKREEV 
IGNNIDMLIP RDLRPAHPEY IRHNREGGKA RVEGMSRELQ LEKKDGSKIW TRFALSKVSA
EGKVYYLALV RDASVEMAQK EQTRQLIIAV DHLDRPVIVL DPERHIVQCN RAFTEMFGYC
ISEASGMQPD TLLNIPEFPA DNRIRLQQLL WKTARDQDEF LLLTRTGEKI WIKASISPVY
DVLAHLQNLV MTFSDITEER QIRQLEGNIL AAMCSSPPFH EMGEIICRNI ESVLNESHVS
LFAQRNGMPI HWASSSHGAE IQNAQSWSAT IRQRDGAPAG ILQIKTSSGA ETSAFIERVA
DISQHMAALA LEQEKSRQHI EQLIQFDPMT GLPNRNNLHN YLDDLVDKAV SPVVYLIGVD
HIQDVIDSLG YAWADQALLE VVNRFREKLK PDQYLCRIEG TQFVLVSLEN DVSNITQIAD
ELRNVVSKPI MIDDKPFPLT LSIGISYDVG KNRDYLLSTA HNAMDYIRKN GGNGWQFFSP
AMNEMVKERL VLGAALKEAI SNNQLKLVYQ PQIFAETGEL YGIEALARWH DPLHGHVPPS
RFIPLAEEIG EIENIGRWVI AEACRQLAEW RSQNIHIPAL SVNLSALHFR SNQLPYQVSD
AMHAWGIDGH QLTVEITESM MMEHDTEIFK RIQILRDMGV GLSVDDFGTG FSGLSRLVSL
PVTEIKIDKS FVDRCLTEKR ILALLEAITS IGQSLNLTVV AEGVETKEQF EMLRKIHCRV
IQGYFFSRPL PAEEIPGWMS SVLPLKI