| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1564 |
|---|
| Symbol | sfcA |
|---|
| ID | 5591799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 1570784 |
|---|
| End bp | 1572481 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640920717 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_001458273 |
|---|
| Protein GI | 157160955 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCAA AAACAAAAAA ACAGCGTTCG CTTTATATCC CTTACGCTGG CCCTGTACTG
CTGGAATTTC CGTTGTTGAA TAAAGGCAGT GCCTTCAGCA TGGAAGAACG CCGTAACTTC
AACCTGCTGG GGTTACTGCC GGAAGTGGTC GAAACCATCG AAGAACAAGC GGAACGAGCA
TGGATCCAGT ATCAGGGATT CAAAACCGAA ATCGACAAAC ACATCTACCT GCGTAACATC
CAGGACACTA ACGAAACCCT CTTCTACCGT CTGGTAAACA ATCATCTTGA TGAGATGATG
CCTGTTATTT ATACCCCAAC CGTCGGCGCA GCCTGTGAGC GTTTTTCTGA GATCTACCGC
CGTTCACGCG GCGTGTTTAT CTCTTACCAG AACCGGCACA ATATGGACGA TATTCTGCAA
AACGTGCCGA ACCATAATAT TAAAGTGATT GTGGTGACTG ACGGTGAACG TATTCTGGGG
CTTGGTGACC AGGGCATCGG CGGGATGGGC ATTCCGATCG GTAAACTGTC GCTCTATACC
GCCTGTGGCG GCATCAGCCC GGCGTATACC CTTCCGGTGG TGCTGGATGT CGGAACGAAC
AACCAACAGC TGCTTAACGA TCCGCTGTAT ATGGGCTGGC GTAATCCGCG TATCACTGAC
GACGAATACT ATGAATTCGT TGATGAATTT ATCCAGGCTG TGAAACAACG CTGGCCAGAC
GTGCTGTTGC AGTTTGAAGA CTTTGCTCAA AAAAATGCGA TGCCGTTACT TAACCGCTAT
CGCAATGAAA TTTGTTCTTT TAACGATGAC ATTCAGGGCA CTGCGGCGGT AACAGTCGGC
ACACTGATCG CAGCAAGCCG AGCGGCAGGT GGTCAGTTAA GCGAGAAAAA AATCGTCTTC
CTTGGTGCAG GTTCAGCGGG ATGCGGCATT GCCGAAATGA TCATCGCCCA GACCCAGCGC
GAAGGATTAA GCGAGGAAGC GGCGCGGCAG AAAGTCTTTA TGGTCGATCG CTTTGGCTTG
CTGACTGACA AGATGCCGAA CCTGCTGCCT TTCCAGACCA AACTGGTGCA GAAGCGCGAA
AACCTCAGTG ACTGGGATAC CGACAGCGAT GTGCTGTCAC TGCTGGATGT GGTGCGCAAT
GTAAAACCAG ATATTCTGAT TGGCGTCTCA GGACAGACCG GGCTGTTTAC GGAAGAGATC
ATCCGTGAGA TGCATAAACA CTGTCCGCGT CCGATCGTGA TGCCGCTGTC TAACCCGACG
TCACGCGTGG AAGCCACACC GCAGGACATT ATCGCCTGGA CCGAAGGTAA CGCGCTGGTC
GCCACGGGCA GCCCGTTTAA TCCAGTGGTA TGGAAAGATA AAATCTACCC TATCGCCCAG
TGTAACAACG CCTTTATTTT CCCGGGCATC GGCCTGGGTG TTATTGCTTC CGGCGCGTCA
CGTATCACCG ATGAGATGCT GATGTCGGCA AGTGAAACGC TGGCGCAGTA TTCACCATTG
GTGCTGAACG GCGAAGGTAT GGTACTGCCG GAACTGAAAG ATATTCAGAA AGTCTCCCGC
GCAATTGCGT TTGCGGTTGG CAAAATGGCG CAGCAGCAAG GCGTGGCGGT GAAAACCTCT
GCCGAAGCCC TGCAACAGGC CATTGACGAT AATTTCTGGC AAGCCGAATA CCGCGACTAC
CGCCGTACCT CCATCTAA
|
|---|
| Protein sequence | MEPKTKKQRS LYIPYAGPVL LEFPLLNKGS AFSMEERRNF NLLGLLPEVV ETIEEQAERA
WIQYQGFKTE IDKHIYLRNI QDTNETLFYR LVNNHLDEMM PVIYTPTVGA ACERFSEIYR
RSRGVFISYQ NRHNMDDILQ NVPNHNIKVI VVTDGERILG LGDQGIGGMG IPIGKLSLYT
ACGGISPAYT LPVVLDVGTN NQQLLNDPLY MGWRNPRITD DEYYEFVDEF IQAVKQRWPD
VLLQFEDFAQ KNAMPLLNRY RNEICSFNDD IQGTAAVTVG TLIAASRAAG GQLSEKKIVF
LGAGSAGCGI AEMIIAQTQR EGLSEEAARQ KVFMVDRFGL LTDKMPNLLP FQTKLVQKRE
NLSDWDTDSD VLSLLDVVRN VKPDILIGVS GQTGLFTEEI IREMHKHCPR PIVMPLSNPT
SRVEATPQDI IAWTEGNALV ATGSPFNPVV WKDKIYPIAQ CNNAFIFPGI GLGVIASGAS
RITDEMLMSA SETLAQYSPL VLNGEGMVLP ELKDIQKVSR AIAFAVGKMA QQQGVAVKTS
AEALQQAIDD NFWQAEYRDY RRTSI
|
|---|
| |