Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A1524 |
Symbol | ydcS |
ID | 5594940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 1532084 |
End bp | 1533229 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640920679 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | YP_001458235 |
Protein GI | 157160917 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 62 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGA CATTTGCCCG CAGCAGCCTG TGTGCGCTCA GCATGACAAT AATGACCGCT CACGCCGCCG AACCGCCTAC CAATTTAGAT AAACCGGAAG GGCGACTGGA TATTATCGCC TGGCCGGGAT ACATCGAACG CGGACAAACT GATAAACAAT ACGACTGGGT AACGCAGTTC GAAAAAGAGA CAGGCTGCGC GGTGAATGTG AAAACCGCCG CGACTTCCGA TGAAATGGTC AGTCTGATGA CCAAAGGGGG TTACGATCTG GTTACGGCAT CCGGCGATGC CTCGCTGCGT TTGATTATGG GTAAACGCGT GCAGCCGATT AATACCGCAT TGATTCCCAA CTGGAAAACG CTCGATCCGC GCGTGGTTAA AGGCGACTGG TTTAATGTTG GCGGCAAAGT TTACGGCACA CCTTACCAAT GGGGGCCGAA CCTGCTGATG TACAACACTA AAACCTTCCC GACGCCGCCG GATAGCTGGC AAGTGGTTTT TGTTGAGCAA AATCTGCCGG ACGGCAAGAG CAATAAAGGC CGCGTTCAGG CTTATGATGG CCCTATCTAC ATTGCGGACG CTGCGTTGTT CGTTAAAGCC ACTCAGCCGC AGTTGGGCAT CAGCGATCCG TATCAACTCA CCGAAGAACA GTACCAGGCG GTGCTGAAAG TGCTGCGCGC TCAACACAGT TTGATCCATC GCTACTGGCA TGACAATACC GTGCAAATGA GCGATTTCAA AAACGAGGGT GTGGTTGCTT CCAGTGCCTG GCCCTATCAG GCCAACGCCC TGAAAGCCGA AGGCCAGCCT GTTGCTACCG TTTTCCCGAA GGAGGGTGTT ACCGGTTGGG CTGATACCAC CATGCTGCAT AGCGAAGCGA AACATCCGGT TTGCGCCTAC AAATGGATGA ACTGGTCATT AACGCCAAAA GTGCAGGGCG ATGTGGCGGC CTGGTTTGGC TCGTTACCGG TAGTGCCGGA AGGGTGTAAA GCCAGTCCGT TATTAGGCGA AAAAGGTTGT GAAACCAACG GTTTTAACTA TTTCGACAAA ATCGCCTTCT GGAAAACGCC TATAGCAGAA GGGGGCAAGT TTGTTCCCTA CAGTCGCTGG ACGCAGGATT ACATTGCCAT TATGGGCGGT CGCTAA
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Protein sequence | MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DKQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKT LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDNT VQMSDFKNEG VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R
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