| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1482 |
|---|
| Symbol | paaC |
|---|
| ID | 5591517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 1482247 |
|---|
| End bp | 1483674 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640920639 |
|---|
| Product | 3-hydroxy-acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001458195 |
|---|
| Protein GI | 157160877 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02279] 3-hydroxyacyl-CoA dehydrogenase PaaC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATAA ATGTGCAAAC TGTGGCAGTG ATTGGGAGCG GCACCATGGG GGCAGGCATT
GCTGAAGTTG CCGCCAGTCA TGGACATCAG GTTTTACTGT ATGACATTTC TGCTGAAGCG
CTGACCCGCG CAATCGACGG GATACACGCG CGGCTAAATT CACGCGTGAC GCGGGGAAAA
CTGACCGCTG AAACCTGTGA ACGCACATTG AAACGCCTGA TCCCGGTGAC CGATATTCAC
GCGCTGGCAG CAGCGAATCT GGTTATTGAA GCGGCGTCTG AACGTCTGGA AGTTAAAAAA
GCGCTCTTTG CACAACTGGC GGAAGTTTGC CCGCCACAAA CGCTATTGAC CACTAACACT
TCGTCAATCT CTATAACCGC GATTGCTGCG GAGGTAAAAA ATCCTGAACG TGTTGCGGGG
CTGCATTTTT TTAACCCGGC ACCGGTGATG AAGTTGGTGG AGGTGGTCAG TGGGCTGGCA
ACGGCAGCGG AAGTTGTCGA GCAGTTGTGT GAACTGACAT TGAGTTGGGG TAAGCAGCCA
GTGCGCTGTC ATTCGACCCC CGGATTTATC GTTAACCGTG TTGCGCGTCC TTATTATTCC
GAGGCCTGGC GGGCACTGGA AGAGCAGGTT GCTGCACCAG AAGTGATTGA CGCTGCACTT
CGCGATGGCG CTGGTTTCCC GATGGGGCCG CTGGAATTAA CCGATCTGAT TGGTCAGGAC
GTCAATTTTG CTGTCACCTG TTCGGTGTTT AACGCTTTCT GGCAGGAGCG TCGTTTTTTA
CCTTCGCTGG TGCAACAGGA ACTGGTGATT GGTGGACGGT TGGGCAAGAA AAGTGGGCTG
GGCGTGTACG ACTGGCGCGC GGAACGTGAG GCAGTTGTTG GCCTGGAAGC GGTAAGCGAC
AGTTTTAGCC CAATGAAAGT AGAAAAGAAA AGTGACGGTG TCACGGAAAT TGACGATGTT
TTATTGATTG AGACACAAGG CGAGACGGCA CAGGCGCTGG CAATACGACT GGCACGCCCG
GTGGTAGTGA TCGATAAAAT GGCGGGCAAG GTGGTGACCA TTGCTGCTGC AGCGGTGAAC
CCGGACTCAG CGACCCGCAA GGCCATTTAT TACCTGCAAC AGCAGGGCAA AACAGTGCTG
CAAATTGCAG ATTACCCAGG AATGCTGATT TGGCGAACGG TAGCAATGAT CATCAATGAA
GCCCTTGATG CGCTTCAAAA AGGCGTGGCC TCTGAACAGG ATATCGATAC CGCCATGCGT
CTTGGGGTGA ATTATCCATA TGGCCCACTT GCCTGGGGAG CGCAACTTGG CTGGCAGCGA
ATATTAAGGC TCCTTGAAAA TCTACAGCAT CACTATGGCG AAGAACGCTA TCGCCCATGT
TCATTGCTGC GCCAACGGGC GCTTCTGGAG AGCGGTTATG AGTCATAA
|
|---|
| Protein sequence | MMINVQTVAV IGSGTMGAGI AEVAASHGHQ VLLYDISAEA LTRAIDGIHA RLNSRVTRGK
LTAETCERTL KRLIPVTDIH ALAAANLVIE AASERLEVKK ALFAQLAEVC PPQTLLTTNT
SSISITAIAA EVKNPERVAG LHFFNPAPVM KLVEVVSGLA TAAEVVEQLC ELTLSWGKQP
VRCHSTPGFI VNRVARPYYS EAWRALEEQV AAPEVIDAAL RDGAGFPMGP LELTDLIGQD
VNFAVTCSVF NAFWQERRFL PSLVQQELVI GGRLGKKSGL GVYDWRAERE AVVGLEAVSD
SFSPMKVEKK SDGVTEIDDV LLIETQGETA QALAIRLARP VVVIDKMAGK VVTIAAAAVN
PDSATRKAIY YLQQQGKTVL QIADYPGMLI WRTVAMIINE ALDALQKGVA SEQDIDTAMR
LGVNYPYGPL AWGAQLGWQR ILRLLENLQH HYGEERYRPC SLLRQRALLE SGYES
|
|---|
| |