Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A1405 |
Symbol | sapD |
ID | 5592566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 1400090 |
End bp | 1401082 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640920560 |
Product | peptide ABC transporter, ATP-binding protein SapD |
Protein accession | YP_001458119 |
Protein GI | 157160801 |
COG category | [V] Defense mechanisms |
COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 0.46623 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCATTAC TCGATATTCG TAACCTGACC ATTGAATTTA AAACCGGTGA TGAGTGGGTT AAAGCCGTCG ACCGGGTAAG TATGACCTTA ACCGAAGGTG AAATCCGCGG TCTTGTTGGT GAATCCGGTT CCGGCAAGAG TTTGATTGCG AAAGCGATTT GTGGGGTGAA TAAAGATAAC TGGCGTGTTA CTGCTGACCG TATGCGTTTT GATGATATCG ATTTGCTGCG TCTCTCCGCA CGCGAACGGC GCAAACTGGT TGGCCATAAC GTGTCGATGA TTTTCCAGGA ACCGCAGTCG TGTCTTGACC CTTCAGAACG TGTGGGTCGC CAGTTGATGC AAAACATCCC AGCCTGGACC TATAAAGGCC GTTGGTGGCA GCGTTTTGGC TGGCGCAAAC GCCGTGCCAT TGAACTGCTG CACCGCGTGG GGATTAAAGA TCACAAAGAT GCGATGCGCA GTTTTCCCTA TGAGTTGACC GAAGGTGAAT GTCAGAAAGT GATGATAGCC ATTGCACTGG CGAATCAACC GCGTCTGCTG ATTGCTGACG AACCGACCAA CTCAATGGAG CCAACAACCC AGGCGCAAAT CTTTCGCCTG CTGACGCGTC TCAACCAAAA CAGCAATACC ACTATTTTGC TTATCAGCCA TGACTTACAA ATGCTTAGCC AATGGGCGGA TAAAATTAAC GTGCTTTACT GCGGTCAAAC AGTGGAAACC GCGCCGAGTA AGGAGTTGGT GACGATGCCA CATCATCCTT ATACCCAGGC GCTGATCCGC GCGATACCAG ACTTCGGCAG CGCGATGCCG CATAAAAGTC GCCTCAATAC GCTACCCGGC GCTATCCCAC TGCTGGAACA GTTACCGATT GGTTGTCGTC TGGGGCCACG TTGCCCGTAT GCACAACGAG AATGCATTGT GACGCCACGT TTGACGGGGG CGAAAAATCA TCTCTATGCC TGTCATTTCC CGCTGAACAT GGAGAAAGAG TGA
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Protein sequence | MPLLDIRNLT IEFKTGDEWV KAVDRVSMTL TEGEIRGLVG ESGSGKSLIA KAICGVNKDN WRVTADRMRF DDIDLLRLSA RERRKLVGHN VSMIFQEPQS CLDPSERVGR QLMQNIPAWT YKGRWWQRFG WRKRRAIELL HRVGIKDHKD AMRSFPYELT EGECQKVMIA IALANQPRLL IADEPTNSME PTTQAQIFRL LTRLNQNSNT TILLISHDLQ MLSQWADKIN VLYCGQTVET APSKELVTMP HHPYTQALIR AIPDFGSAMP HKSRLNTLPG AIPLLEQLPI GCRLGPRCPY AQRECIVTPR LTGAKNHLYA CHFPLNMEKE
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