Gene EcHS_A1396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A1396 
Symbol 
ID5592728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp1391159 
End bp1391908 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content49% 
IMG OID640920551 
ProductDeoR family transcriptional regulator 
Protein accessionYP_001458110 
Protein GI157160792 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00000000115636 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTCCC GACAACAAAC TATTCTACAG ATGGTCATTG ACCAGGGTCA GGTTAGCGTA 
ACCGATCTGG CAAAAGCCAC TGGAGTTTCT GAAGTTACCA TTCGCCAGGA TCTCAACACA
CTCGAAAAAC TGAGTTACCT CCGCCGTGCA CATGGCTTTG CTGTTTCGCT TGATAGTGAT
GACGTCGAAA CCCGTATGAT GAGCAACTAT ACGCTGAAGC GTGAACTCGC CGAGTTTGCC
GCGTCGCTGG TTCAACCGGG CGAAACCATC TTTATCGAAA ATGGCAGCAG CAATGCCCTA
CTCGCCCGGA CTCTGGGCGA GCAGAAGAAA AATGTCACTA TCATCACGGT CAGCAGCTAC
ATCGCGCATT TGCTGAAAGA CGCGCCTTGT GAAGTTATTT TGCTCGGTGG CGTGTATCAG
AAAAAAAGCG AAAGTATGGT TGGCCCTTTG ACACGCCAGT GCATCCAACA GGTGCATTTC
AGCAAAGCAT TTATTGGTAT TGATGGCTGG CAACCTGAAA CTGGATTTAC CGGTCGCGAT
ATGATGCGTA CCGATGTGGT CAATGCCGTG CTGGAAAAAG AGTGCGAAGC GATAGTCCTG
ACTGACAGCT CGAAATTTGG TGCTGTACAT TCATACTCCA TCGGTCCCGT TGAGCGATTC
AATCGCGTGA TTACCGATTC GAAAATACGC GCCAGCGATC TGATGCATCT TGAGCACAGT
AAACTCACCG TTCACGTCGT TGACATTTAA
 
Protein sequence
MNSRQQTILQ MVIDQGQVSV TDLAKATGVS EVTIRQDLNT LEKLSYLRRA HGFAVSLDSD 
DVETRMMSNY TLKRELAEFA ASLVQPGETI FIENGSSNAL LARTLGEQKK NVTIITVSSY
IAHLLKDAPC EVILLGGVYQ KKSESMVGPL TRQCIQQVHF SKAFIGIDGW QPETGFTGRD
MMRTDVVNAV LEKECEAIVL TDSSKFGAVH SYSIGPVERF NRVITDSKIR ASDLMHLEHS
KLTVHVVDI