Gene EcHS_A1316 details

Gene Information

• Locus tag: EcHS_A1316
• Symbol: prfA
• ID: 5593790
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 1313451
• End bp: 1314533
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640920473
• Product: peptide chain release factor 1
• Protein accession: YP_001458034
• Protein GI: 157160716
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.000000000000610156
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCCTT CTATCGTTGC CAAACTGGAA GCCCTGCATG AACGCCATGA AGAAGTTCAG 
GCGTTGCTGG GTGACGCGCA AACTATCGCC GACCAGGAAC GTTTTCGCGC ATTATCACGC 
GAATATGCGC AGTTAAGTGA TGTTTCGCGC TGTTTTACCG ACTGGCAACA GGTTCAGGAA 
GATATCGAAA CCGCACAGAT GATGCTCGAT GATCCTGAAA TGCGTGAGAT GGCGCAGGAT 
GAACTGCGCG AAGCTAAAGA AAAAAGCGAG CAACTGGAAC AGCAATTACA GGTTCTGTTA 
CTGCCAAAAG ATCCTGATGA CGAACGTAAC GCCTTCCTCG AAGTCCGAGC CGGAACCGGC 
GGCGACGAAG CGGCGCTGTT CGCGGGCGAT CTGTTCCGTA TGTACAGCCG TTATGCCGAA 
GCCCGCCGCT GGCGGGTAGA AATCATGAGC GCCAGCGAGG GTGAACATGG TGGTTATAAA 
GAGATCATCG CCAAAATTAG CGGTGATGGT GTGTATGGTC GTCTGAAATT TGAATCCGGC 
GGTCATCGCG TGCAACGTGT TCCTGCTACG GAATCGCAGG GTCGTATTCA TACTTCTGCT 
TGTACCGTTG CGGTAATGCC AGAACTGCCT GACGCAGAAC TGCCGGACAT CAACCCAGCA 
GATTTACGCA TTGATACTTT CCGCTCGTCA GGGGCGGGTG GTCAGCACGT TAACACCACC 
GATTCGGCAA TTCGTATTAC TCACTTGCCG ACCGGGATTG TTGTTGAATG TCAGGACGAA 
CGTTCACAAC ATAAAAACAA AGCTAAAGCA CTTTCTGTTC TCGGTGCTCG CATCCACGCT 
GCTGAAATGG CAAAACGCCA ACAGGCCGAA GCGTCTACCC GTCGTAACCT GCTGGGGAGT 
GGCGATCGCA GCGACCGTAA CCGTACTTAC AACTTCCCGC AGGGGCGCGT TACCGATCAC 
CGCATCAACC TGACGCTCTA CCGCCTGGAT GAAGTGATGG AAGGTAAGCT GGATATGCTG 
ATTGAACCGA TTATCCAGGA ACATCAGGCC GACCAACTGG CGGCGTTGTC CGAGCAGGAA 
TAA 

 

Protein sequence

MKPSIVAKLE ALHERHEEVQ ALLGDAQTIA DQERFRALSR EYAQLSDVSR CFTDWQQVQE 
DIETAQMMLD DPEMREMAQD ELREAKEKSE QLEQQLQVLL LPKDPDDERN AFLEVRAGTG 
GDEAALFAGD LFRMYSRYAE ARRWRVEIMS ASEGEHGGYK EIIAKISGDG VYGRLKFESG 
GHRVQRVPAT ESQGRIHTSA CTVAVMPELP DAELPDINPA DLRIDTFRSS GAGGQHVNTT 
DSAIRITHLP TGIVVECQDE RSQHKNKAKA LSVLGARIHA AEMAKRQQAE ASTRRNLLGS 
GDRSDRNRTY NFPQGRVTDH RINLTLYRLD EVMEGKLDML IEPIIQEHQA DQLAALSEQE