Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A1245 |
Symbol | potB |
ID | 5593562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | - |
Start bp | 1246036 |
End bp | 1246893 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640920405 |
Product | spermidine/putrescine ABC transporter membrane protein |
Protein accession | YP_001457967 |
Protein GI | 157160649 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 0.332009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAACA CAAGTAAGTT CCAGAATGTA GTGATTGTCA CTATTGTCGG TTGGCTTGTG TTGTTTGTCT TTCTGCCCAA CCTGATGATC ATTGGCACCA GCTTTTTGAC CCGCGACGAC GCCAGTTTCG TCAAAATGGT CTTTACGCTG GATAACTACA CGCGTCTGCT CGATCCGCTC TATTTTGAAG TGCTATTGCA CTCGCTGAAT ATGGCGCTGA TCGCCACCCT CGCCTGCCTG GTGCTGGGCT ACCCGTTTGC CTGGTTTCTG GCGAAGCTGC CACACAAGGT GCGTCCGCTG CTGCTGTTTC TGCTGATTGT TCCCTTCTGG ACCAACTCAT TGATTCGTAT CTACGGGCTG AAAATTTTCC TCAGCACCAA AGGCTATCTC AACGAGTTTT TGCTCTGGCT GGGCGTTATC GACACACCAA TCCGTATCAT GTTCACGCCC AGTGCGGTGA TTATCGGTCT GGTTTACATT CTGCTGCCGT TTATGGTGAT GCCGCTGTAC TCCAGTATCG AAAAACTGGA TAAGCCGTTG CTTGAGGCGG CGCGCGATCT CGGTGCCAGC AAGTTACAGA CTTTTATCCG CATAATTATT CCACTGACGA TGCCGGGGAT TATTGCCGGA TGTCTGCTGG TGATGCTGCC AGCGATGGGC CTGTTCTATG TGTCCGACCT GATGGGCGGT GCGAAAAACC TGCTGATCGG TAACGTCATC AAGGTACAGT TCCTCAATAT TCGTGACTGG CCGTTTGGTG CAGCCACCAG CATTACGCTG ACTATCGTAA TGGGCCTGAT GTTGCTGGTT TACTGGCGCG CTTCTCGTCT GCTGAATAAA AAGGTGGAAC TCGAATGA
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Protein sequence | MKNTSKFQNV VIVTIVGWLV LFVFLPNLMI IGTSFLTRDD ASFVKMVFTL DNYTRLLDPL YFEVLLHSLN MALIATLACL VLGYPFAWFL AKLPHKVRPL LLFLLIVPFW TNSLIRIYGL KIFLSTKGYL NEFLLWLGVI DTPIRIMFTP SAVIIGLVYI LLPFMVMPLY SSIEKLDKPL LEAARDLGAS KLQTFIRIII PLTMPGIIAG CLLVMLPAMG LFYVSDLMGG AKNLLIGNVI KVQFLNIRDW PFGAATSITL TIVMGLMLLV YWRASRLLNK KVELE
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