| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1240 |
|---|
| Symbol | lolE |
|---|
| ID | 5593095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 1241026 |
|---|
| End bp | 1242270 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640920400 |
|---|
| Product | outer membrane-specific lipoprotein transporter subunit LolE |
|---|
| Protein accession | YP_001457962 |
|---|
| Protein GI | 157160644 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family
[TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.00286068 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATGC CTTTATCGTT ATTAATTGGC CTGCGTTTTA GTCGCGGACG GCGGCGCGGC
GGCATGGTGT CGCTGATCTC CGTCATTTCT ACCATTGGCA TTGCCCTCGG CGTGGCGGTA
TTGATCGTCG GCTTAAGCGC GATGAACGGC TTTGAACGCG AACTGAACAA CCGTATTCTG
GCGGTGGTGC CGCATGGTGA AATCGAGGCG GTGGATCAGC CGTGGACTAA CTGGCAGGAA
GCACTGGATC ACGTGCAAAA AGTGCCGGGT ATTGCCGCTG CCGCGCCGTA TATCAATTTC
ACCGGGCTGG TGGAAAGTGG CGCGAATCTT CGCGCAATCC AGGTGAAGGG CGTTAACCCG
CAACAGGAAC AGCGTCTGAG CGCATTACCC TCGTTTGTCC AGGGCGATGC GTGGCGCAAT
TTTAAAGCGG GCGAACAGCA AATTATCATC GGCAAAGGCG TGGCGGATGC GCTGAAAGTG
AAGCAGGGGG ATTGGGTGTC GATTATGATC CCCAACTCGA ATCCCGAGCA TAAACTGATG
CAGCCAAAAC GTGTGCGTTT GCACGTTGCC GGTATTTTGC AGTTGAGTGG TCAACTCGAT
CACAGTTTTG CCATGATCCC GCTGGCAGAT GCCCAACAAT ATCTTGATAT GGGTTCCAGC
GTATCAGGTA TTGCCCTTAA AATGACGGAT GTTTTCAACG CCAATAAGCT GGTACGCGAT
GCGGGTGAAG TGACCAACAG CTATGTTTAT ATTAAAAGCT GGATTGGTAC TTACGGCTAT
ATGTATCGCG ATATCCAAAT GATCCGCGCC ATTATGTATC TGGCGATGGT ACTGGTGATT
GGCGTGGCCT GTTTCAACAT CGTCTCCACC TTAGTGATGG CGGTGAAAGA CAAGAGTGGC
GATATCGCAG TATTAAGAAC GCTGGGGGCG AAAGATGGTT TAATTCGCGC CATCTTTGTC
TGGTATGGAT TGCTGGCAGG GCTGTTCGGC AGCCTGTGTG GTGTGATTAT CGGCGTAGTG
GTTTCACTGC AACTTACCCC GATTATTGAG TGGATTGAAA AGTTGATCGG TCATCAGTTC
CTCTCCAGCG ATATCTATTT TATTGATTTC CTGCCATCGG AATTGCACTG GCTGGACGTC
TTCTACGTAC TGGTCACAGC ATTGTTGCTG AGTCTTTTGG CAAGTTGGTA TCCGGCGCGG
CGCGCCAGTA ATATTGACCC TGCGCGAGTC CTTAGCGGCC AGTAA
|
|---|
| Protein sequence | MAMPLSLLIG LRFSRGRRRG GMVSLISVIS TIGIALGVAV LIVGLSAMNG FERELNNRIL
AVVPHGEIEA VDQPWTNWQE ALDHVQKVPG IAAAAPYINF TGLVESGANL RAIQVKGVNP
QQEQRLSALP SFVQGDAWRN FKAGEQQIII GKGVADALKV KQGDWVSIMI PNSNPEHKLM
QPKRVRLHVA GILQLSGQLD HSFAMIPLAD AQQYLDMGSS VSGIALKMTD VFNANKLVRD
AGEVTNSYVY IKSWIGTYGY MYRDIQMIRA IMYLAMVLVI GVACFNIVST LVMAVKDKSG
DIAVLRTLGA KDGLIRAIFV WYGLLAGLFG SLCGVIIGVV VSLQLTPIIE WIEKLIGHQF
LSSDIYFIDF LPSELHWLDV FYVLVTALLL SLLASWYPAR RASNIDPARV LSGQ
|
|---|
| |