Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A1239 |
Symbol | lolD |
ID | 5593094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 1240325 |
End bp | 1241026 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640920399 |
Product | lipoprotein transporter ATP-binding subunit |
Protein accession | YP_001457961 |
Protein GI | 157160643 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0000867827 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGA TCCTGTTGCA ATGCGACAAC CTGTGCAAAC GCTATCAGGA AGGCAGTGTG CAAACCGATG TGCTGCACAA TGTCAGTTTC AGCGTCGGCG AAGGTGAAAT GATGGCGATC GTCGGTAGCT CTGGTTCCGG TAAAAGTACC TTGCTGCACC TGCTGGGCGG GCTGGATACG CCAACCTCCG GCGATGTGAT TTTTAATGGT CAGCCAATGA GCAAACTGTC GTCGGCAGCG AAAGCTGAAC TGCGCAACCA GAAGCTGGGC TTTATTTATC AGTTTCACCA CCTGCTGCCG GATTTTACCG CCCTGGAAAA CGTGGCTATG CCGCTGCTGA TTGGCAAGAA AAAGCCCGCT GAAATCAACA GCCGTGCACT TGAGATGTTA AAAGCGGTGG GGCTGGATCA TCGTGCGAAT CACCGCCCAT CTGAACTTTC TGGCGGCGAA CGCCAGCGTG TGGCGATTGC CCGTGCGCTG GTGAATAACC CGCGCCTGGT ACTGGCGGAT GAACCTACCG GTAACCTCGA TGCGCGTAAC GCCGACAGCA TCTTCCAGTT GCTTGGGGAA TTGAATCGCT TGCAGGGCAC CGCCTTCCTG GTGGTTACTC ACGACCTGCA ACTGGCGAAA CGTATGAGCC GCCAGTTAGA AATGCGTGAT GGTCGTCTGA CGGCGGAACT GAGCCTGATG GGGGCGGAGT AA
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Protein sequence | MNKILLQCDN LCKRYQEGSV QTDVLHNVSF SVGEGEMMAI VGSSGSGKST LLHLLGGLDT PTSGDVIFNG QPMSKLSSAA KAELRNQKLG FIYQFHHLLP DFTALENVAM PLLIGKKKPA EINSRALEML KAVGLDHRAN HRPSELSGGE RQRVAIARAL VNNPRLVLAD EPTGNLDARN ADSIFQLLGE LNRLQGTAFL VVTHDLQLAK RMSRQLEMRD GRLTAELSLM GAE
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