| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1138 |
|---|
| Symbol | pgaB |
|---|
| ID | 5593558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 1150138 |
|---|
| End bp | 1152156 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640920301 |
|---|
| Product | outer membrane N-deacetylase |
|---|
| Protein accession | YP_001457865 |
|---|
| Protein GI | 157160547 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.0115575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTACGTA ATGGAAATAA ATATCTCCTG ATGCTGGTGA GTATAATTAT GCTCACCGCG
TGCATTAGCC AGTCAAGAAC ATCATTTATA CCGCCACAGG ATCGCGAATC TTTACTCGCC
GAGCAACCGT GGCCGCATAA TGGTTTTGTA GCGATTTCAT GGCATAACGT TGAAGACGAA
GCTGCCGACC AGCGTTTTAT GTCAGTGCGG ACATCAGCAC TGCGTGAACA ATTTGCCTGG
CTGCGCGAGA ACGGTTATCA ACCGGTCAGT ATTGCTCAAA TTCGTGAAGC ACGTCGAGGA
GGAAAACCGC TACCGGAAAA AGCTGTAGTG CTGACTTTTG ATGACGGCTA CCAGAGTTTT
TATACCCGCG TCTTCCCAAT TCTTCAGGCC TTCCAGTGGC CTGCTGTATG GGCCCCCGTC
GGCAGTTGGG TCGATACGCC AGCGGATAAA CAAGTAAAAT TTGGCGATGA GTTGGTCGAT
CGAGAATATT TTGCCACGTG GCAACAAGTG CGAGAAGTTG CGCGTTCCCG GCTCGTTGAG
CTCGCTTCTC ATACATGGAA TTCTCACTAC GGTATTCAGG CTAATGCCAC CGGCAGCTTA
TTGCCTGTAT ATGTAAATCG TGCATATTTT ACTGACCACG CACGGTATGA AACCGCAGCA
GAATACCGGG AAAGAATTCG TCTGGATGCT GTAAAAATGA CGGAATACCT GCGTACAAAG
GTTGAGGTAA ATCCACACGT TTTTGTTTGG CCTTATGGCG AAGCGAATGG CATAGCGATA
GAGGAATTAA AAAAACTCGG TTATGACATG TTCTTCACCC TTGAATCAGG TTTGGCAAAT
GCGTCGCAAT TGGATTCCAT TCCGCGGGTA TTAATCGCCA ATAATCCCTC ATTAAAAGAG
TTTGCCCAGC AAATTATTAC CGTACAGGAA AAATCACCAC AACGGATAAT GCATATCGAT
CTTGATTACG TTTATGACGA AAACCTCCAG CAAATGGATC GCAATATTGA TGTGCTAATT
CAGCGGGTGA AAGATATGCA AATATCAACC GTGTATTTGC AGGCATTTGC TGATCCCGAT
GGTGATGGGC TGGTCAAAGA GGTCTGGTTT CCAAATCGTT TGCTACCAAT GAAAGCAGAT
ATTTTTAGTC GGGTTGCCTG GCAATTACGT ACCCGCTCAG GTGTAAACAT CTATGCGTGG
ATGCCGGTAT TAAGCTGGGA TTTAGATCCC ACATTAACGC GAGTAAAATA CTTACCAACA
GGGGAGAAAA AAGCACAAAT TCATCCTGAA CAATATCACC GTCTCTCTCC TTTCGATGAC
AGAGTCAGAG CACAAGTTGG CATGTTATAT GAAGATCTTG CCGGACATGC TGCTTTTGAT
GGCATATTGT TCCACGATGA TGCTTTGCTT TCAGATTATG AAGATGCCAG TGCACCGGCT
ATCACGGCTT ATCAGCAAGC AGGCTTTAGC GGGAGTCTGA GCGAAATTCG ACAAAACCCG
GAGCAATTTA AACAGTGGGC CCGCTTTAAA AGTCGTGCGT TAACTGACTT CACTTTAGAA
CTTAGTGCGC GCGTAAAAGC CATTCGCGGT CCACATATTA AAACTGCACG AAATATTTTT
GCACTTCCGG TAATACAACC TGAAAGTGAA GCCTGGTTTG CACAGAATTA TGCTGATTTC
CTAAAAAGCT ATGACTGGAC CGCTATTATG GCTATGCCTT ATCTGGAAGG TGTCGCAGAA
AAATCGGCTG ACCAATGGTT AATACAATTG ACCAATCAAA TTAAAAACAT CCCTCAGGCT
AAAGACAAAT CTATTTTAGA ATTACAGGCA CAAAACTGGC AGAAAAATGG TCAGCATCAG
GCTATTTCTT CGCAACAACT CGCTCACTGG ATGAGCCTAT TACAACTGAA TGGAGTGAAA
AACTATGGTT ATTATCCCGA CAATTTTCTG CATAACCAAC CTGAAATAGA CCTTATTCGT
CCTGAGTTTT CAACAGCCTG GTATCCGAAA AATGATTAA
|
|---|
| Protein sequence | MLRNGNKYLL MLVSIIMLTA CISQSRTSFI PPQDRESLLA EQPWPHNGFV AISWHNVEDE
AADQRFMSVR TSALREQFAW LRENGYQPVS IAQIREARRG GKPLPEKAVV LTFDDGYQSF
YTRVFPILQA FQWPAVWAPV GSWVDTPADK QVKFGDELVD REYFATWQQV REVARSRLVE
LASHTWNSHY GIQANATGSL LPVYVNRAYF TDHARYETAA EYRERIRLDA VKMTEYLRTK
VEVNPHVFVW PYGEANGIAI EELKKLGYDM FFTLESGLAN ASQLDSIPRV LIANNPSLKE
FAQQIITVQE KSPQRIMHID LDYVYDENLQ QMDRNIDVLI QRVKDMQIST VYLQAFADPD
GDGLVKEVWF PNRLLPMKAD IFSRVAWQLR TRSGVNIYAW MPVLSWDLDP TLTRVKYLPT
GEKKAQIHPE QYHRLSPFDD RVRAQVGMLY EDLAGHAAFD GILFHDDALL SDYEDASAPA
ITAYQQAGFS GSLSEIRQNP EQFKQWARFK SRALTDFTLE LSARVKAIRG PHIKTARNIF
ALPVIQPESE AWFAQNYADF LKSYDWTAIM AMPYLEGVAE KSADQWLIQL TNQIKNIPQA
KDKSILELQA QNWQKNGQHQ AISSQQLAHW MSLLQLNGVK NYGYYPDNFL HNQPEIDLIR
PEFSTAWYPK ND
|
|---|
| |