| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0923 |
|---|
| Symbol | |
|---|
| ID | 5594297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 927547 |
|---|
| End bp | 928572 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640920093 |
|---|
| Product | PBSX family phage portal protein |
|---|
| Protein accession | YP_001457660 |
|---|
| Protein GI | 157160342 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5518] Bacteriophage capsid portal protein |
|---|
| TIGRFAM ID | [TIGR01540] phage portal protein, PBSX family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA GTAAGAAGAA CCGCGCTGCG GCGACGAAAC AGATCCAGCT TAAAAGTCAA
ACTACAGCCG AAGCATTCAG CTTCGGCGAT CCCGTTCCTG TTCTGGACCG CCGAGAACTG
CTGGATTATG TGGAATGCGT ACAGATGGAC CGCTGGTATG AGCCGCCCGT CAGCTTTGAC
GGACTGGCGC GCACCTTCCG CGCTGCCGTG CATCATAGTT CCCCGATTGC AGTAAAGTGC
AACATTCTGA CCAGCACCTA CATCCCTCAC CCGCTGCTCA GCCAGCAGGC TTTTTCGCGT
TTTGTGCAGG ACTATCTGGT ATTTGGTAAC GCCTACCTGG AGAAACGCAC GAACCGCTTC
GGTGAAGTTA TCGCCCTTGA ACCTGCCCTG GCAAAATATA CCCGACGCGG GTTAGACCTG
GATACCTACT GGTTTGTGCA ATACGGTATG ACCACGCAGC CATATCAGTT CACGAAAGGC
AGCATCTTTC ATCTGATGGA ACCGGACATC AACCAGGAGA TCTACGGCCT GCCCGGTTAT
CTTTCTGCCA TTCCGTCAGC CCTGCTCAAC GAGTCCGCCA CGCTGTTCCG CCGAAAGTAT
TACATTAACG GCAGTCATGC TGGCTTCATC ATGTACATGA CCGATGCTGC GCAGAACCAG
GAGGATGTGA ACAACCTCCG CAACGCAATG AAAAGCGCCA AAGGTCCAGG CAACTTCCGC
AACCTGTTTA TGTACTCACC TAACGGCAAA AAGGATGGTC TTCAGATTAT CCCGTTGTCA
GAAGTCGCGG CGAAGGATGA ATTTCTGAAT ATCAAAAATG TCAGCCGCGA CGACATGATG
GCTGCGCACC GTGTACCGCC ACAAATGATG GGGATAATGC CTAATAATGT TGGGGGATTT
GGGGATGTGG AGAAAGCCTG CAAAGTATTT GTTAGAAATG AGTTAACAGT ATTACAAAAA
AAAATACTGG AACTGAACAC TTGGTTAGAT GATGATGTAA TTAATTTTAA TGAGTATATG
CTTTGA
|
|---|
| Protein sequence | MGKSKKNRAA ATKQIQLKSQ TTAEAFSFGD PVPVLDRREL LDYVECVQMD RWYEPPVSFD
GLARTFRAAV HHSSPIAVKC NILTSTYIPH PLLSQQAFSR FVQDYLVFGN AYLEKRTNRF
GEVIALEPAL AKYTRRGLDL DTYWFVQYGM TTQPYQFTKG SIFHLMEPDI NQEIYGLPGY
LSAIPSALLN ESATLFRRKY YINGSHAGFI MYMTDAAQNQ EDVNNLRNAM KSAKGPGNFR
NLFMYSPNGK KDGLQIIPLS EVAAKDEFLN IKNVSRDDMM AAHRVPPQMM GIMPNNVGGF
GDVEKACKVF VRNELTVLQK KILELNTWLD DDVINFNEYM L
|
|---|
| |