Gene EcHS_A0616 details

Gene Information

• Locus tag: EcHS_A0616
• ID: 5594987
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 626778
• End bp: 628679
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640919797
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_001457379
• Protein GI: 157160061
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.0499415
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAACCG GATTACGTTT CACACTGGAA GTGGACGGCC TGCCGCCGGA TGCTTTTGCG 
GTAGTTTCCT TTCATCTGAA CCAGTCACTC TCTTCGCTCT TTTCCCTCGA TCTCTCCCTG 
GTCAGCCAGC AGTTTCTCTC CCTTGAATTT GCGCAGGTGC TGGACAAAAT GGCCTACCTG 
ACGATATGGC AGGGCGATGA AGTACAGCGC CGGGTGAAAG GCGTGGTGAC CTGGTTTGAA 
CTCGGGGAGA ACGACAAAAA CCAGATGCTG TACAGCATGA AGGTGCACCC GCCGCTGTGG 
CGTGCCGGTC TGCGCCAGAA CTTCCGTATC TTCCAGAACG AGGACATCAA AAGCATCCTC 
GGCACGATGT TGCAGGAAAA CGGGGTGACC GAATGGAGTC CGCTGTTCAG CGAGCCGCAT 
CCTTCCCGTG AGTTTTGTGT CCAGTACGGT GAGACTGATT ACGATTTTCT GTGCCGGATG 
GCGGCGGAGG AAGGCATCTT CTTTTATGAG GAGCATGCTT ACAAAAGTAC CGACCAGAGC 
CTGGTGCTGT GCGACACAGT CCGCCATCTG CCCGAATCTT TTGAAATCCC ATGGAACCCG 
AACACCCGTA CCGAGGTGAG CACCCTCTGC ATCAGCCAGT TCCGCTACAG CGCACAAATC 
CGCCCTTCTT CCGTGGTGAC CAAAGACTAC ACCTTTAAAC GCCCCGGCTG GGCCGGACGT 
TTTGAACAGG AAGGCCAGCA CCAGGACTAC CAGCGCACGC AGTATGAAGT GTATGACTAC 
CCCGGACGTT TCAAGAGCGC CCACGGGCAG AACTTTGCCC GCTGGCAGAT GGACGGCTGG 
CGAAACAACG CAGAAACCGC GCGGGGAATG AGCCGCTCGC CGGAGATATG GCCGGGACGG 
CGAATTGTGC TGACGGGGCA TCCGCAGGCG AACCTGAACC GGGAATGGCA GGTGGTGGCA 
AGTGAACTGC ACGGCGAACA GCCACAGGCG GTGCCAGGAC GGCAGGGAGC GGGGACGGCG 
CTGGAGAACC ATTTTGCGGT GATCCCGGCA GACAGAACAT GGCGACCACA GCCGTTGCTG 
AAACCGCTGG TCGACGGCCC GCAGAGCGCT GTCGTGACAG GACCGGCAGG CGAGGAAATC 
TTCTGCGACG AACATGGTCG CGTGCGGGTG AAGTTCAACT GGGACCGTTA TAACCCGGCA 
GACCAAGACA GTTCGTGCTG GATCCGTGTG GCACAGGCGT GGGCAGGCAC CGGTTTTGGC 
CACCTGGCGA TACCGCGTGT GGGTCAGGAG GTGATTGTGG ACTTCCTCAA CGGCGATCCG 
GACCAGCCGA TCATTATGGG GCGCACCTAC CACCAGGAAA ACCGCACCCC CGGCAGCCTG 
CCGGGAACAA AGACGCAGAT GACCATCCGC TCCAAAACGT ACATGGGCAG CGGATTTAAT 
GAGCTGAAGT TTGATGATGC GACAGGGAGA GAACAGGTCT ACATCCACGC GCAGAAGAAC 
ATGGATACCG AAGTGCTCAA CGACCGTACC ACCACCGTAA AACACGATCA CCGCGAAACC 
GTAAAAAATG ACCAGACGGT CACGATCCAG GAAGGTAACC GCCTTCTTAC GGTGGAAAAA 
GGCCACAAGA TCACCGGAGT ACTGAAAGGG TCTTTATCTG AGGATGTCTT TCAGGACAGA 
GGCACGATTG CCGGTTCGGT GCATGTTGAC GCTGTAAACA ATGGTGGCGA AGGCGACGGT 
ATACAGGCTT ATACGGCGAT TAAGGAAATT TTGCTGGCTG TGGAGGAAAG CAAAATTGCG 
CTGACGCCGG ATGGCATTCA GCTACAGGTC GGGGAATCGA CGGTAATCAG GCTGTCGAAG 
GATGGCATCA CCATCGTGGG CGGTTCTGTT TTCATCAACT GA 

 

Protein sequence

MSTGLRFTLE VDGLPPDAFA VVSFHLNQSL SSLFSLDLSL VSQQFLSLEF AQVLDKMAYL 
TIWQGDEVQR RVKGVVTWFE LGENDKNQML YSMKVHPPLW RAGLRQNFRI FQNEDIKSIL 
GTMLQENGVT EWSPLFSEPH PSREFCVQYG ETDYDFLCRM AAEEGIFFYE EHAYKSTDQS 
LVLCDTVRHL PESFEIPWNP NTRTEVSTLC ISQFRYSAQI RPSSVVTKDY TFKRPGWAGR 
FEQEGQHQDY QRTQYEVYDY PGRFKSAHGQ NFARWQMDGW RNNAETARGM SRSPEIWPGR 
RIVLTGHPQA NLNREWQVVA SELHGEQPQA VPGRQGAGTA LENHFAVIPA DRTWRPQPLL 
KPLVDGPQSA VVTGPAGEEI FCDEHGRVRV KFNWDRYNPA DQDSSCWIRV AQAWAGTGFG 
HLAIPRVGQE VIVDFLNGDP DQPIIMGRTY HQENRTPGSL PGTKTQMTIR SKTYMGSGFN 
ELKFDDATGR EQVYIHAQKN MDTEVLNDRT TTVKHDHRET VKNDQTVTIQ EGNRLLTVEK 
GHKITGVLKG SLSEDVFQDR GTIAGSVHVD AVNNGGEGDG IQAYTAIKEI LLAVEESKIA 
LTPDGIQLQV GESTVIRLSK DGITIVGGSV FIN