Gene EcHS_A0485 details

Gene Information

• Locus tag: EcHS_A0485
• Symbol: ribD
• ID: 5593805
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 497247
• End bp: 498350
• Gene Length: 1104 bp
• Protein Length: 367 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640919668
• Product: bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
• Protein accession: YP_001457253
• Protein GI: 157159935
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 66
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGGACG AGTATTACAT GGCGCGGGCG CTAAAGCTGG CGCAACGAGG ACGTTTTACC 
ACGCATCCCA ACCCGAATGT CGGGTGCGTC ATTGTCAAAG ATGGCGAAAT TGTCGGTGAA 
GGTTACCACC AACGTGCGGG TGAACCACAT GCCGAAGTAC ACGCGTTGCG TATGGCGGGT 
GAAAAAGCCA AAGGTGCGAC CGCCTATGTC ACACTCGAAC CCTGTAGCCA TCATGGTCGT 
ACGCCACCGT GCTGTGACGC ACTCATCGCC GCTGGCGTAG CGCGCGTGGT TGCCTCGATG 
CAAGATCCTA ACCCGCAGGT CGCTGGGCGT GGACTTTACC GTCTGCAACA GGCTGGCATT 
GACGTCAGCC ACGGGCTGAT GATGAGTGAA GCCGAGCAAT TGAATAAAGG CTTTCTCAAG 
CGGATGCGCA CCGGCTTTCC TTATATTCAG TTAAAACTTG GCGCATCGCT TGATGGCCGC 
ACGGCGATGG CGAGCGGCGA AAGCCAGTGG ATCACTTCGC CTCAGGCGCG GCGCGACGTA 
CAACGACAGC GCGCACAAAG TCATGCCATT TTAACCAGCA GCGCCACGGT GCTGGCGGAT 
GATCCAGCCT TAACAGTGCG TTGGTCTGAA CTGGATGAAC AAACTCAGGC GCTCTACCCG 
CAACAAAATC TCCGCCAGCC AGTACGTATT GTGATTGATA GCCAAAATCG CGTGACGCCG 
GAACATCGCA TTGTGCAGCA GCCCGGCGAA ACCTGGTTCG CGCGTACGCA GGAAGATTCT 
AGTGAGTGGC CGGAAACGGT GCGTACCTTG CTGACTCCAG AGCATAAAGG TCATCTGGAT 
CTGGTTGTAC TGATGATGCA ACTGGGTAAA CAGCAAATTA ACAGCATCTG GGTGGAAGCG 
GGGCCAACGC TCGCTGGCGC ATTGCTGCAG GCGGGTTTAG TCGATGAGCT GATTGTCTAT 
ATCGCACCTA AACTATTAGG CAGCGACGCC CGCGGATTAT GCACGCTGCC AGGGCTTGAG 
AAATTAGCCG ACGCCCCCCA ATTTAAATTC AAAGAGATAC GTCATGTAGG CCCGGATGTT 
TGCCTGCATT TAGTGGGTGC ATGA 

 

Protein sequence

MQDEYYMARA LKLAQRGRFT THPNPNVGCV IVKDGEIVGE GYHQRAGEPH AEVHALRMAG 
EKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVASM QDPNPQVAGR GLYRLQQAGI 
DVSHGLMMSE AEQLNKGFLK RMRTGFPYIQ LKLGASLDGR TAMASGESQW ITSPQARRDV 
QRQRAQSHAI LTSSATVLAD DPALTVRWSE LDEQTQALYP QQNLRQPVRI VIDSQNRVTP 
EHRIVQQPGE TWFARTQEDS SEWPETVRTL LTPEHKGHLD LVVLMMQLGK QQINSIWVEA 
GPTLAGALLQ AGLVDELIVY IAPKLLGSDA RGLCTLPGLE KLADAPQFKF KEIRHVGPDV 
CLHLVGA