| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0399 |
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| Symbol | prpD |
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| ID | 5595152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | + |
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| Start bp | 416811 |
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| End bp | 418262 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640919584 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001457169 |
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| Protein GI | 157159851 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 61 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCTC AAATCAACAA CATCCGCCCG GAATTTGATC GTGAAATCGT TGATATCGTC
GATTACGTCA TGAACTACGA AATCAGCTCT AAAGTGGCCT ACGACACCGC ACATTACTGC
CTGCTCGACA CGCTCGGCTG CGGTCTGGAA GCTCTCGAAT ACCCGGCCTG TAAAAAACTG
CTGGGGCCAA TTGTTCCCGG CACCGTCGTA CCCAACGGCG TGCGCGTCCC CGGAACTCAG
TTCCAGCTCG ACCCCGTCCA GGCGGCATTT AACATCGGCG CGATGATCCG CTGGCTCGAT
TTCAACGATA CCTGGCTGGC GGCGGAGTGG GGCCATCCTT CCGACAACCT CGGCGGCATT
CTGGCAACGG CGGACTGGCT TTCGCGCAAC GCGGTCGCCA GCGGCAAAGC GCCGTTGACC
ATGAAACAGG TGCTGACCGC AATGATCAAA GCCCATGAAA TTCAGGGCTG CATCGCGCTG
GAAAACTCCT TTAACCGCGT CGGCCTCGAC CACGTTCTGT TAGTGAAAGT GGCTTCCACC
GCCGTGGTCG CCGAAATGCT CGGCCTGACC CGCGAGGAAA TTCTCAACGC CGTTTCGCTG
GCGTGGGTGG ACGGTCAGTC GCTGCGCACC TATCGCCATG CGCCGAACAC CGGCACGCGT
AAATCCTGGG CGGCGGGCGA TGCCACTTCC CGCGCGGTAC GTCTGGCACT GATGGCGAAA
ACGGGCGAAA TGGGTTACCC GTCAGCCCTG ACTGCGCCGG TGTGGGGCTT CTACGACGTC
TCCTTTAAAG GTGAATCGTT CCGCTTCCAG CGCCCGTACG GTTCCTACGT TATGGAAAAT
GTGCTGTTCA AAATCTCCTT CCCGGCGGAG TTCCACTCCC AGACGGCAGT TGAAGCAGCG
ATGACGCTCT ATGAACAGAT GCAGGCAGCA GGCAAAACGG CGGCGGATAT CGAAAAAGTG
ACCATTCGCA CCCACGAAGC CTGTATTCGC ATCATCGACA AAAAAGGACC GCTCAATAAC
CCGGCAGACC GCGATCACTG CATTCAGTAC ATGGTGGCGA TCCCGCTGCT GTTCGGGCGC
TTAACGGCGG CAGATTACGA GGACAACGTG GCGCAAGATA AACGTATCGA CGCCCTGCGC
GAGAAGATCA ATTGCTTTGA AGATCCGGCA TTTACCGCTG ACTACCACGA CCCGGAAAAA
CGCGCCATCG CCAATGCCAT TACCCTTGAG TTCACCGACG GCACACGATT TGAAGAAGTG
GTGGTGGAGT ACCCCATTGG TCATGCTCGC CGCCGTCAGG ATGGTATTCC GAAACTGGTC
GATAAATTCA AAATCAATCT CGCGCGCCAG TTCCCGACTC GCCAACAGCA GCGCATTCTG
GAGGTTTCTC TCGACAGAAC TCGCCTGGAA CAGATGCCGG TCAATGAGTA TCTCGACCTG
TACGTCATTT AA
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| Protein sequence | MSAQINNIRP EFDREIVDIV DYVMNYEISS KVAYDTAHYC LLDTLGCGLE ALEYPACKKL
LGPIVPGTVV PNGVRVPGTQ FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRN AVASGKAPLT MKQVLTAMIK AHEIQGCIAL ENSFNRVGLD HVLLVKVAST
AVVAEMLGLT REEILNAVSL AWVDGQSLRT YRHAPNTGTR KSWAAGDATS RAVRLALMAK
TGEMGYPSAL TAPVWGFYDV SFKGESFRFQ RPYGSYVMEN VLFKISFPAE FHSQTAVEAA
MTLYEQMQAA GKTAADIEKV TIRTHEACIR IIDKKGPLNN PADRDHCIQY MVAIPLLFGR
LTAADYEDNV AQDKRIDALR EKINCFEDPA FTADYHDPEK RAIANAITLE FTDGTRFEEV
VVEYPIGHAR RRQDGIPKLV DKFKINLARQ FPTRQQQRIL EVSLDRTRLE QMPVNEYLDL
YVI
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