Gene EcHS_A0398 details

Gene Information

• Locus tag: EcHS_A0398
• Symbol: prpC
• ID: 5591599
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 415608
• End bp: 416777
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640919583
• Product: methylcitrate synthase
• Protein accession: YP_001457168
• Protein GI: 157159850
• COG category: [C] Energy production and conversion
• COG ID: [COG0372] Citrate synthase
• TIGRFAM ID: [TIGR01800] 2-methylcitrate synthase/citrate synthase II

Plasmid Coverage information

• Num covering plasmid clones: 58
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGACA CAACGATCCT GCAAAACAGT ACCCATGTCA TTAAACCGAA AAAATCGGTG 
GCACTTTCCG GCGTTCCGGC GGGCAATACG GCGCTCTGCA CCGTGGGTAA AAGTGGCAAT 
GACCTGCATT ACCGTGGCTA CGATATTCTT GATCTGGCGG AACATTGCGA ATTTGAAGAA 
GTGGCTCATC TGCTGATCCA CGGCAAACTG CCGACCCGTG ACGAACTCGC CGCTTACAAA 
ACGAAACTGA AAGCCCTGCG TGGTTTACCG GCTAACGTGC GTACCGTGCT GGAAGCCTTA 
CCGGCGGCGT CACACCCGAT GGATGTTATG CGCACCGGTG TTTCCGCGCT CGGCTGCACG 
CTGCCAGAAA AAGAGGGGCA TACCGTCTCT GGCGCGCGGG ATATTGCCGA CAAACTGCTG 
GCGTCGCTTA GCTCGATTCT CCTTTATTGG TATCACTACA GCCACAACGG CGAACGCATC 
CAACCGGAAA CCGATGACGA CTCCATCGGC GGTCACTTCC TGCATCTGCT GCACGGCGAA 
AAGCCATCGC AAAGCTGGGA AAAGGCGATG CATATCTCGC TGGTGCTGTA CGCCGAACAC 
GAGTTTAACG CCTCCACCTT TACCAGTCGG GTGATTGCGG GCACCGGCTC TGATATGTAT 
TCCGCGATTA TTGGCGCGAT TGGCGCACTG CGCGGGCCAA AACACGGCGG GGCGAATGAA 
GTGTCGCTGG AGATCCAGCA ACGCTACGAA ACGCCGGACG AAGCCGAAGC AGATATCCGC 
AAGCGCGTGG AAAACAAAGA AGTGGTCATT GGTTTTGGTC ATCCGGTTTA CACCATCGCT 
GACCCGCGCC ACCAGGTGAT TAAACGTGTG GCGAAGCAGC TCTCGCAGGA AGGCGGCTCG 
CTGAAGATGT ACAACATCGC CGATCGCCTG GAAACGGTGA TGTGGGAGAG CAAAAAGATG 
TTCCCCAATC TCGACTGGTT CTCTGCTGTT TCCTACAACA TGATGGGCGT TCCCACCGAG 
ATGTTCACAC CACTGTTTGT TATCGCCCGC GTCACCGGCT GGGCGGCGCA CATTATCGAA 
CAACGTCAGG ACAACAAAAT TATCCGTCCT TCCGCCAATT ATGTTGGACC GGAAGACCGC 
CCGTTTGTCG CGCTGGATAA GCGCCAGTAA 

 

Protein sequence

MSDTTILQNS THVIKPKKSV ALSGVPAGNT ALCTVGKSGN DLHYRGYDIL DLAEHCEFEE 
VAHLLIHGKL PTRDELAAYK TKLKALRGLP ANVRTVLEAL PAASHPMDVM RTGVSALGCT 
LPEKEGHTVS GARDIADKLL ASLSSILLYW YHYSHNGERI QPETDDDSIG GHFLHLLHGE 
KPSQSWEKAM HISLVLYAEH EFNASTFTSR VIAGTGSDMY SAIIGAIGAL RGPKHGGANE 
VSLEIQQRYE TPDEAEADIR KRVENKEVVI GFGHPVYTIA DPRHQVIKRV AKQLSQEGGS 
LKMYNIADRL ETVMWESKKM FPNLDWFSAV SYNMMGVPTE MFTPLFVIAR VTGWAAHIIE 
QRQDNKIIRP SANYVGPEDR PFVALDKRQ