Gene EcHS_A0397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A0397 
SymbolprpB 
ID5591598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp414673 
End bp415563 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content56% 
IMG OID640919582 
Product2-methylisocitrate lyase 
Protein accessionYP_001457167 
Protein GI157159849 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2513] PEP phosphonomutase and related enzymes 
TIGRFAM ID[TIGR02317] methylisocitrate lyase 


Plasmid Coverage information

Num covering plasmid clones55 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCTAC ACTCTCCAGG TAAAGCGTTT CGCGCTGCAC TGTCTAAAGA AAATCCATTG 
CAGATTGTTG GCACCATCAA CGCTAATCAT GCGCTGTTGG CGCAGCGTGC CGGATATCAG
GCAATTTATC TCTCCGGCGG TGGCGTGGCG GCAGGTTCGC TGGGGCTGCC CGATCTCGGT
ATTTCTACCC TTGATGATGT GCTGACCGAC ATTCGCCGTA TCACCGACGT TTGTTCGCTG
CCGCTGCTGG TGGATGCGGA TATCGGTTTT GGTTCTTCGG CCTTTAACGT GGCGCGTACG
GTGAAATCGA TGATTAAAGC CGGTGCGGCA GGATTGCATA TTGAAGATCA GGTTGGTGCG
AAACGCTGCG GTCATCGCCC GAACAAAGCG ATCGTCTCGA AAGAGGAGAT GGTGGATCGG
ATCCGCGCGG CGGTGGATGC GAAAACCGAT CCTGATTTTG TGATCATGGC GCGCACCGAT
GCGCTGGCGG TAGAGGGGCT GGATGCGGCG ATCGAGCGTG CACAGGCCTA TGTTGAAGCG
GGTGCCGAGA TGTTGTTCCC GGAGGCGATT ACCGAACTCG CCATGTACCG CCAGTTTGCC
GATGCGGTTC AGGTGCCAAT CCTCGCCAAC ATTACCGAAT TTGGTGCCAC GCCGCTGTTT
ACCACCGACG AATTACGCAG CGCCCATGTC GCAATGGCGC TGTACCCGCT TTCAGCGTTC
CGCGCCATGA ACCGCGCCGC TGAACATGTC TACAACGTCC TGCGCCAGGA AGGCACGCAG
AAAAGCGTCA TCGACACCAT GCAGACCCGC AACGAACTGT ACGAAAGCAT CAACTACTAC
CAGTACGAAG AGAAGCTCGA CGACCTGTTT GCCCGTAGCC AGGTGAAATA A
 
Protein sequence
MSLHSPGKAF RAALSKENPL QIVGTINANH ALLAQRAGYQ AIYLSGGGVA AGSLGLPDLG 
ISTLDDVLTD IRRITDVCSL PLLVDADIGF GSSAFNVART VKSMIKAGAA GLHIEDQVGA
KRCGHRPNKA IVSKEEMVDR IRAAVDAKTD PDFVIMARTD ALAVEGLDAA IERAQAYVEA
GAEMLFPEAI TELAMYRQFA DAVQVPILAN ITEFGATPLF TTDELRSAHV AMALYPLSAF
RAMNRAAEHV YNVLRQEGTQ KSVIDTMQTR NELYESINYY QYEEKLDDLF ARSQVK