Gene EcHS_A0373 details

Gene Information

• Locus tag: EcHS_A0373
• Symbol: betT
• ID: 5591500
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: +
• Start bp: 386803
• End bp: 388836
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 640919558
• Product: choline transport protein BetT
• Protein accession: YP_001457144
• Protein GI: 157159826
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 0.834443
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGACC TTTCACACAG CAGGGAAAAG GACAAAATCA ATCCGGTGGT GTTTTACACC 
TCCGCCGGAC TGATTTTGTT GTTTTCCCTG ACAACGATCC TGTTTCGCGA CTTCTCGGCC 
CTGTGGATTG GCCGCACGCT GGACTGGGTT TCTAAAACCT TCGGTTGGTA CTATCTACTG 
GCGGCAACGC TCTATATTGT CTTTGTGGTC TGTATCGCTT GTTCGCGTTT TGGTTCGGTG 
AAGCTCGGGC CAGAACAATC CAAACCGGAA TTCAGCCTGC TGAGTTGGGC GGCGATGCTG 
TTTGCTGCCG GGATCGGTAT CGACCTGATG TTCTTCTCCG TAGCCGAACC GGTAACGCAG 
TATATGCAGC CGCCGGAAGG CGCGGGACAG ACGATTGAGG CCGCGCGTCA GGCGATGGTC 
TGGACGCTGT TTCACTACGG CTTAACCGGC TGGTCGATGT ATGCGCTGAT GGGCATGGCG 
CTCGGATACT TTAGCTATCG TTATAATTTG CCGCTCACCA TCCGCTCGGC GCTGTACCCG 
ATCTTCGGTA AACGGATTAA CGGGCCGATA GGGCACTCAG TGGATATTGC AGCGGTGATC 
GGCACCATCT TCGGTATTGC CACTACGCTC GGTATCGGTG TGGTGCAGCT TAACTATGGC 
TTGAGCGTAC TGTTTGATAT TCCCGATTCG ATGGCGGCAA AAGCGGCACT GATCGCCTTG 
TCGGTGATAA TCGCCACGAT CTCTGTCACC TCCGGTGTCG ATAAGGGGAT TCGTGTGTTA 
TCGGAACTTA ACGTTGCGCT GGCGCTGGGA TTGATCCTGT TCGTATTGTT TATGGGCGAC 
ACCTCGTTCC TGCTTAATGC GCTGGTGCTG AATGTTGGCG ACTATGTGAA TCGCTTTATG 
GGCATGACGC TCAACAGTTT TGCCTTCGAC CGTCCAGTTG AGTGGATGAA TAACTGGACG 
CTCTTCTTCT GGGCATGGTG GGTGGCATGG TCGCCGTTTG TCGGCTTGTT CCTGGCGCGT 
ATCTCGCGTG GGCGTACCAT TCGCCAGTTC GTGCTGGGCA CGTTGATTAT TCCGTTTACC 
TTCACGCTGT TATGGCTCTC GGTGTTCGGC AATAGCGCGC TGTATGAAAT CATCCACGGC 
GGCGCGGCAT TTGCCGAGGA AGCGATGGTC CATCCGGAGC GCGGCTTCTA CAGCCTGCTG 
GCGCAGTATC CGGCGTTTAC CTTTAGCGCC TCCGTCGCCA CCATTACTGG CCTGCTGTTT 
TATGTGACCT CGGCGGACTC CGGTGCGCTG GTGCTGGGGA ATTTCACCTC GCAGCTTAAA 
GATATCAACA GCGACGCCCC CGGCTGGCTG CGCGTCTTCT GGTCGGTGGC GATTGGCCTG 
CTGACGCTCG GCATGCTGAT GACCAACGGG ATATCCGCGC TGCAAAACAC CACGGTGATT 
ATGGGGCTGC CGTTCAGCTT TGTGATCTTC TTCGTGATGG CGGGGTTGTA TAAATCTCTG 
AAGGTAGAAG ATTACCGCCG TGAAAGTGCC AACCGCGATA CCGCACCGCG ACCGCTGGGG 
CTTCAGGATC GCCTGAGCTG GAAAAAACGT CTCTCGCGCC TGATGAATTA TCCGGGCACG 
CGTTACACTA AACAGATGAT GGAGACGGTC TGTTACCCGG CAATGGAAGA AGTGGCGCAG 
GAGCTGCGGT TGCGCGGCGC ATACGTGGAG CTAAAAAGCC TGCCGCCGGA AGAGGGACAA 
CAGTTGGGGC ATCTGGATTT GTTGGTGCAT ATGGGCGAAG AACAAAACTT TGTCTATCAG 
ATTTGGCCGC AGCAATATTC GGTGCCGGGC TTTACCTACC GCGCACGTAG CGGTAAATCG 
ACCTACTACC GGCTGGAAAC CTTCCTGTTA GAAGGCAGCC AGGGCAACGA CCTGATGGAC 
TACAGCAAAG AGCAGGTGAT CACCGATATT CTTGACCAGT ACGAGCGGCA CCTTAACTTT 
ATTCATCTCC ATCGTGAAGC GCCGGGCCAT AGCGTGATGT TCCCGGACGC GTGA 

 

Protein sequence

MTDLSHSREK DKINPVVFYT SAGLILLFSL TTILFRDFSA LWIGRTLDWV SKTFGWYYLL 
AATLYIVFVV CIACSRFGSV KLGPEQSKPE FSLLSWAAML FAAGIGIDLM FFSVAEPVTQ 
YMQPPEGAGQ TIEAARQAMV WTLFHYGLTG WSMYALMGMA LGYFSYRYNL PLTIRSALYP 
IFGKRINGPI GHSVDIAAVI GTIFGIATTL GIGVVQLNYG LSVLFDIPDS MAAKAALIAL 
SVIIATISVT SGVDKGIRVL SELNVALALG LILFVLFMGD TSFLLNALVL NVGDYVNRFM 
GMTLNSFAFD RPVEWMNNWT LFFWAWWVAW SPFVGLFLAR ISRGRTIRQF VLGTLIIPFT 
FTLLWLSVFG NSALYEIIHG GAAFAEEAMV HPERGFYSLL AQYPAFTFSA SVATITGLLF 
YVTSADSGAL VLGNFTSQLK DINSDAPGWL RVFWSVAIGL LTLGMLMTNG ISALQNTTVI 
MGLPFSFVIF FVMAGLYKSL KVEDYRRESA NRDTAPRPLG LQDRLSWKKR LSRLMNYPGT 
RYTKQMMETV CYPAMEEVAQ ELRLRGAYVE LKSLPPEEGQ QLGHLDLLVH MGEEQNFVYQ 
IWPQQYSVPG FTYRARSGKS TYYRLETFLL EGSQGNDLMD YSKEQVITDI LDQYERHLNF 
IHLHREAPGH SVMFPDA