Gene EcHS_A0150 details

Gene Information

• Locus tag: EcHS_A0150
• Symbol: ligT
• ID: 5593464
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 160549
• End bp: 161079
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640919336
• Product: 2'-5' RNA ligase
• Protein accession: YP_001456931
• Protein GI: 157159613
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1514] 2'-5' RNA ligase
• TIGRFAM ID: [TIGR02258] 2'-5' RNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0000000345552
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGAAC CGCAACGTCT GTTCTTTGCT ATCGACTTAC CTGCAGAAAT CCGCGAACAG 
ATTATCCATT GGCGCGCCAC ACACTTCCCA CCTGAGGCGG GACGTCCGGT CGCCGCCGAT 
AATTTGCATC TGACTCTGGC ATTTTTAGGC GAAGTGAGCG CCGAGAAAGA GAAGGCGCTT 
TCTCTTTTAG CCGGACGGAT TCGTCAACCT GGTTTCACAC TCACGCTTGA TGACGCCGGA 
CAATGGCTGC GTTCGCGTGT GGTGTGGTTA GGGATGCGTC AGCCTCCACG CGGCTTAATC 
CAGCTGGCGA ATATGCTCCG TTCACAGGCT GCCCGCAGCG GTTGTTTTCA AAGCAATCGT 
CCGTTTCATC CACATATTAC CTTATTGCGC GACGCCAGCG AGGCGGTGAC AATCCCGCCG 
CCAGGTTTTA ACTGGTCTTA TGCGGTGACG GAGTTCACCC TTTACGCCTC CTCGTTTGCC 
CGTGGACGCA CACGCTACAC GCCGCTAAAA CGCTGGGCGC TAACGCAATA A 

 

Protein sequence

MSEPQRLFFA IDLPAEIREQ IIHWRATHFP PEAGRPVAAD NLHLTLAFLG EVSAEKEKAL 
SLLAGRIRQP GFTLTLDDAG QWLRSRVVWL GMRQPPRGLI QLANMLRSQA ARSGCFQSNR 
PFHPHITLLR DASEAVTIPP PGFNWSYAVT EFTLYASSFA RGRTRYTPLK RWALTQ