| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0128 |
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| Symbol | gcd |
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| ID | 5592492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli HS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009800 |
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| Strand | - |
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| Start bp | 140319 |
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| End bp | 142709 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640919315 |
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| Product | glucose dehydrogenase |
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| Protein accession | YP_001456910 |
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| Protein GI | 157159592 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.126967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATTA ACAATACAGG CTCGCGACGA TTACTCGTCA CGCTAACAGC CCTTTTTGCA
GCGCTTTGCG GGCTGTATCT ACTCATTGGC GGAGGCTGGC TGGTCGCGAT TGGCGGCTCC
TGGTACTACC CTATCGCTGG TCTTGTGATG CTCGGCGTCG CCTGGATGCT GTGGCGCAGT
AAACGTGCCG CGCTTTGGCT GTACGCAGCC CTGCTGCTCG GCACCATGAT TTGGGGCGTC
TGGGAAGTTG GTTTCGACTT CTGGGCGCTG ACTCCGCGCA GCGACATTCT GGTCTTCTTC
GGCATCTGGC TGATCCTGCC GTTTGTCTGG CGTCGCCTGG TCATTCCTGC CAGCGGCGCA
GTTGCCGCAC TGGTGGTGGC ACTGCTGATT AGCGGTGGTA TCCTGACCTG GGCCGGATTT
AACGATCCGC AGGAAATCAA CGGCACCTTA AGCGCCAATG CCACACCTGC GGAAGCTATC
TCACCCGTTG CCGATCAGGA CTGGCCTGCC TATGGTCGCA ATCAGGAAGG TCAACGCTTT
TCACCTCTGA AACAAATTAA CGCCGATAAC GTCCATAATC TGAAAGAAGC CTGGGTGTTC
CGTACTGGCG ATGTGAAGCA GCCGAACGAT CCGGGCGAAA TCACCAATGA AGTGACGCCG
ATTAAAGTGG GCGACACCCT TTACCTGTGT ACCGCTCACC AGCGCCTGTT TGCGCTCGAT
GCCGCCAGCG GCAAAGAGAA ATGGCATTAC GATCCTGAGC TGAAAACTAA CGAGTCTTTC
CAGCACGTAA CCTGCCGTGG CGTCTCTTAT CATGAAGCCA AAGCAGAAAC GGCTTCGCCG
GAAGTGATGG CGGATTGCCC GCGTCGTATC ATTCTTCCGG TCAATGATGG TCGACTGATT
GCGATTAACG CTGAAAACGG CAAACTGTGC GAAACCTTCG CCAATAAAGG CGTGCTCAAT
CTGCAAAGCA ATATGCCAGA CACCAAACCG GGTCTGTATG AACCGACTTC GCCACCGATT
ATCACCGATA AAACCATCGT GATGGCCGGT TCAGTTACCG ATAACTTCTC AACCCGCGAA
ACGTCTGGCG TGATCCGTGG TTTTGATGTC AACACCGGGG AGCTGCTGTG GGCTTTTGAT
CCCGGCGCGA AAGATCCGAA CGCAATCCCG TCTGACGAAC ACACCTTTAC CTTTAACTCG
CCAAACTCCT GGGCACCAGC GGCCTATGAC GCGAAGCTGG ATCTGGTCTA TCTGCCGATG
GGCGTGACCA CGCCGGATAT CTGGGGCGGT AACCGCACAC CGGAACAGGA ACGTTATGCC
AGCTCGATTC TGGCGCTGAA TGCCACTACC GGGAAACTGG CGTGGAGCTA CCAGACCGTT
CACCACGACC TGTGGGACAT GGATCTTCCG GCACAGCCGA CGCTGGCGGA CATCACCGTT
AATGGTCAGA AAGTGCCAGT TATTTACGCT CCGGCGAAAA CCGGCAACAT TTTTGTGCTC
GATCGTCGCA ATGGCGAACT GGTGGTTCCG GCCCCGGAAA AACCGGTGCC GCAAGGTGCT
GCGAAAGGCG ATTACGTTAC TCCGACCCAG CCGTTCTCTG AACTGAGCTT CCGTCCGAAG
AAAGATTTGA GCGGTGCGGA TATGTGGGGA GCCACCATGT TTGACCAACT GGTGTGCCGC
GTGATGTTCC ACCAGATGCG CTATGAAGGC ATTTTCACGC CGCCATCTGA ACAGGGCACG
CTGGTCTTCC CGGGTAACCT GGGAATGTTT GAATGGGGCG GGATTTCCGT TGATCCAAAT
CGTGAAGTGG CAATTGCCAA CCCAATGGCA CTGCCGTTTG TTTCGAAACT GATCCCACGC
GGTCCGGGTA ACCCGATGGA GCAGCCGAAA GATGCCAAAG GCACGGGTAC GGAATCCGGC
ATTCAGCCAC AGTACGGTGT ACCGTATGGT GTCACGCTCA ACCCGTTCCT CTCACCGTTT
GGTCTGCCGT GTAAACAGCC AGCATGGGGT TATATCTCGG CGCTGGATCT GAAAACCAAT
GAAGTGGTGT GGAAGAAACG TATTGGTACG CCGCAAGACA GTATGCCGTT CCCGATGCCT
GTACCGGTGC CGTTCAATAT GGGTATGCCT ATGCTGGGCG GGCCAATCTC CACGGCGGGT
AACGTGCTGT TTATCGCTGC TACGGCAGAT AACTACCTGC GCGCTTACAA CATGAGCAAC
GGTGAAAAAC TGTGGCAGGG CCGTTTACCA GCGGGTGGTC AGGCGACGCC AATGACCTAT
GAAGTGAATG GCAAGCAGTA TGTGGTGATC TCCGCAGGCG GTCACGGTTC ATTTGGTACG
AAGATGGGCG ACTATATTGT GGCTTATGCG CTGCCGGATG ATGTGAAATA A
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| Protein sequence | MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS
KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA
VAALVVALLI SGGILTWAGF NDPQEINGTL SANATPAEAI SPVADQDWPA YGRNQEGQRF
SPLKQINADN VHNLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD
AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI
AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE
TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV
NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPK
KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN
REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF
GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG
NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT
KMGDYIVAYA LPDDVK
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