Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcHS_A0117 |
Symbol | pdhR |
ID | 5592526 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli HS |
Kingdom | Bacteria |
Replicon accession | NC_009800 |
Strand | + |
Start bp | 123731 |
End bp | 124495 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640919304 |
Product | transcriptional regulator PdhR |
Protein accession | YP_001456899 |
Protein GI | 157159581 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0000950379 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCTACA GCAAAATCCG CCAACCAAAA CTCTCCGATG TGATTGAGCA GCAACTGGAG TTTTTGATCC TCGAAGGCAC TCTCCGCCCG GGCGAAAAAC TCCCACCGGA ACGCGAACTG GCAAAACAGT TTGACGTCTC CCGTCCCTCC TTGCGTGAGG CGATTCAACG TCTCGAAGCG AAGGGCTTGT TGCTTCGTCG CCAGGGTGGC GGCACTTTTG TCCAGAGCAG CCTATGGCAA AGCTTCAGCG ATCCGCTGGT GGAGCTGCTC TCCGACCATC CTGAGTCACA GTATGACTTG CTCGAAACAC GACACGCCCT GGAAGGTATC GCCGCTTATT ACGCCGCGCT GCGTAGTACC GATGAAGACA AGGAACGCAT CCGTGAACTC CACCACGCCA TAGAGCTGGC GCAGCAGTCT GGCGATCTGG ACGCGGAATC AAACGCCGTA CTCCAGTATC AGATTGCTGT CACTGAAGCG GCCCACAATG TGGTTCTGCT TCATCTGCTA AGGTGTATGG AGCCGATGTT GGCCCAGAAT GTCCGCCAGA ACTTCGAATT GCTCTATTCG CGTCGCGAGA TGCTGCCGCT GGTGAGTAGT CACCGCACCC GCATATTTGA AGCGATTATG GCCGGTAAGC CGGAAGAAGC GCGCGAAGCA TCGCATCGCC ATCTGGCCTT TATCGAAGAA ATTTTGCTCG ACAGAAGTCG TGAAGAGAGC CGCCGTGAGC GTTCTCTGCG TCGTCTGGAG CAACGAAAGA ATTAG
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Protein sequence | MAYSKIRQPK LSDVIEQQLE FLILEGTLRP GEKLPPEREL AKQFDVSRPS LREAIQRLEA KGLLLRRQGG GTFVQSSLWQ SFSDPLVELL SDHPESQYDL LETRHALEGI AAYYAALRST DEDKERIREL HHAIELAQQS GDLDAESNAV LQYQIAVTEA AHNVVLLHLL RCMEPMLAQN VRQNFELLYS RREMLPLVSS HRTRIFEAIM AGKPEEAREA SHRHLAFIEE ILLDRSREES RRERSLRRLE QRKN
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