Gene EcE24377A_E0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcE24377A_E0052 
SymbolydeO 
ID5585874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli E24377A 
KingdomBacteria 
Replicon accessionNC_009790 
Strand
Start bp53749 
End bp54471 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content33% 
IMG OID640913939 
ProductHTH-type transcriptional regulator YdeO 
Protein accessionYP_001451589 
Protein GI157149523 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGAAGGA TAGTAGCTAT GCCCGGAGTG TGTTACTTTA TTCTCATAAA GAAACCAATA 
AATTTTCAGT TTCTTAAGGA TTTCCTGATA TTAAACTATG GTGATGTTCT GTTGCTTAAG
CATTCAGAAA GAGATTTTTT GCAGAGCTAT TCAGATAAAT ATCTGGAAAT TGAACTTAAC
GAAGATACCG TTAGAAACTA TTTATCGTAT TACAACCACT GTGAGAAACA GTTTCTGGAG
ACCCCCCCCT GCATTTTAAG GAAAAGCTTT GCTTATCCAG ATTTATTAAT AAGTATGATA
GATAATATAA ATTCACAAAA TCATATACAT CCAGATTTTA AGGATGCAAT ATTTTTTTCA
TTGCTCTCAG TATTTAGTGA TGTAGCAAAC TTAAGAGCAT TCCTCACATC AGGAATGCCT
ACGTTTTCAG GAAAAGTTCG AAGCATTTTT CTTTCAGATG TTTCTAAACA CTGGAAACTG
AGAGATTTAG CTGATTATCT TTACATGAGT GAGAGCTTAA TAAAGAAGAA ACTATTATTA
GAAAACACTT CTTTTAGTAA AATATTACTT GATACCAGGA TGTCGCTTGC CATTAAATTG
CTAAAGCAAA ATCATCCGAT AAAATATGTG TCTGAAATGT GTGGGTTTAG TAGTACATCG
TACTTTGTAT GCCTTTTCAG ACAATACTAT GAGTGTACGC CACGTAAATA TCTAAAACAT
TAG
 
Protein sequence
MRRIVAMPGV CYFILIKKPI NFQFLKDFLI LNYGDVLLLK HSERDFLQSY SDKYLEIELN 
EDTVRNYLSY YNHCEKQFLE TPPCILRKSF AYPDLLISMI DNINSQNHIH PDFKDAIFFS
LLSVFSDVAN LRAFLTSGMP TFSGKVRSIF LSDVSKHWKL RDLADYLYMS ESLIKKKLLL
ENTSFSKILL DTRMSLAIKL LKQNHPIKYV SEMCGFSSTS YFVCLFRQYY ECTPRKYLKH