| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_E0025 |
|---|
| Symbol | |
|---|
| ID | 5585830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009790 |
|---|
| Strand | - |
|---|
| Start bp | 23260 |
|---|
| End bp | 24783 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640913915 |
|---|
| Product | group II intron-encoded reverse transcriptase/maturase |
|---|
| Protein accession | YP_001451565 |
|---|
| Protein GI | 157149507 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.352503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATAATCA GCGAAATGCA ACGCAAGCTT GCCACATGGG CAGTCACCGA TCCGTCCCTA
CGGATTCAAC GGCTGCTGCG TCTGATAACA CAACCAGAAT GGCTGGCTGA AGCGGCGCGG
ATCACGCTTT CATCAAAGGG GGCCCATACC CCCGGCGTTG ATGGCGTGAA CAAAACAATG
CTACAGGCCA GACTGGCTGT TGAGCTGCAA ATCCTCAGGG ATGAATTACT CTCAGGCCAC
TACCAGCCCT TGCCCGCCAG ACGGGTTTAC ATCCCTAAAA GCAACGGCAA ACTGCGACCA
CTGGGTATCC CCGCGTTGCG GGATCGTATT GTTCAGCGGG CCATGCTGAT GGCGATGGAG
CCGATATGGG AGAGTGATTT TCATACGCTC TCATATGGCT TCCGGCCTGA GCGCAGTGTC
CACCACGCTA TCCGCACGGT GAAATTACAG CTCACAGACT GTGGTGAAAC CCGGGGACGC
TGGGTGATTG AAGGCGACCT GTCCAGTTAC TTCGACACCG TACATCATCG ACTGCTGATG
AAGGCTGTAC GCCGCAGGAT CAGTGACGCA CGTTTCATGA CTCTGCTGTG GAAAACCATC
AAGGCGGGAC ATATCGATGT CGGTCTCTTT CGGGCGGCCA GTGAAGGTGT GCCACAGGGC
GGTGTTATAT CGCCGCTATT ATCGAACATC ATGCTGAATG AGTTCGATCA ATACCTGCAT
GAGCGCTACC TGAGCGGGAA AGCCAGAAAA GATCGGTGGT ACTGGAATAA CAGTATCCAA
CGGGGCCGAA GTACGGCGGT CAGAGAAAAC TGGCAGTGGA AACCCGCGGT GGCGTACTGC
CGCTATGCCG ATGATTTTGT CCTCATCGTC AAAGGCACCA AAGCACAGGC GGAAGCCATC
AGGGAGGAGT GTCGGGGTGT GCTCGAAGGC AGTCTGAAAC TCAGGCTGAA CATGGATAAG
ACTAAAATCA CCCATGTTAA TGACGGCTTT ATCTTTCTGG GGCACAGGAT CATTCGCAAA
CGCAGTCGTT ATGGCGAGAT GCGAGTGGTC TCAACGATCC CGCAGGAGAA AGCCAGAAAC
TTCGCCGCAT CGCTGACAGC ACTGTTATCA GGCAACTACA GTGAAAGCAA AGTCGATATG
GCTGAACAAC TCAACCGAAA ACTGAAAGGC TGGGCCATGT TCTATCAGTT CGTTGATTTT
AAGGCCAAAG TCTTCAGTTA TATCGACCGT GTCGTGTTCT GGAAGCTGGC TCACTGGCTG
GCCCGCAAAT ACCGTACAGG TATCGCTTCC CTGATGAGGT GGTGGTGTAA ATCACCGAAA
CCGGGTCAGA GCAAAACGTG GGTTTTATTT GGTAAAACCA ATCACGGCAA GCTCAGCGGC
GAAATACTGT ACCGGTTGGT GGGGCAAGGC AAGAAGCTGT TCCGCTGGCG GCTACCCGAA
GGTAATCCCT ATCTGAGGAC GGAGACCAGA AACACGTATA CATCGCGCTT TACAGAAGTG
GCAATGGCGT TCGCCAGCAT TTAA
|
|---|
| Protein sequence | MIISEMQRKL ATWAVTDPSL RIQRLLRLIT QPEWLAEAAR ITLSSKGAHT PGVDGVNKTM
LQARLAVELQ ILRDELLSGH YQPLPARRVY IPKSNGKLRP LGIPALRDRI VQRAMLMAME
PIWESDFHTL SYGFRPERSV HHAIRTVKLQ LTDCGETRGR WVIEGDLSSY FDTVHHRLLM
KAVRRRISDA RFMTLLWKTI KAGHIDVGLF RAASEGVPQG GVISPLLSNI MLNEFDQYLH
ERYLSGKARK DRWYWNNSIQ RGRSTAVREN WQWKPAVAYC RYADDFVLIV KGTKAQAEAI
REECRGVLEG SLKLRLNMDK TKITHVNDGF IFLGHRIIRK RSRYGEMRVV STIPQEKARN
FAASLTALLS GNYSESKVDM AEQLNRKLKG WAMFYQFVDF KAKVFSYIDR VVFWKLAHWL
ARKYRTGIAS LMRWWCKSPK PGQSKTWVLF GKTNHGKLSG EILYRLVGQG KKLFRWRLPE
GNPYLRTETR NTYTSRFTEV AMAFASI
|
|---|
| |