| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06934 |
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| Symbol | |
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| ID | 5556974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009784 |
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| Strand | + |
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| Start bp | 2027557 |
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| End bp | 2029128 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640911402 |
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| Product | ribosomal large chain pseudouridine synthase A |
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| Protein accession | YP_001449035 |
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| Protein GI | 156978129 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTGGCTG CCGAGCAATT GCAGCAGCAC CTAATGACAC AAACTGATTT CGAACACGAT
TTCGGTCTTG AGGGTGAGCA AAACGGACGC GGTAAAATGT TCGGTGTTTT GCTAGTACGT
AACCCGCAAG GTGAGCTTGG CTACTTCAGT GCTTTCTCTG GCAAGATTGC CGATCAAAAC
TTGCTTCCGG GTTTTGTTCC GCCCGTATTC GACATGCTGA CAGAAGAAGG CTTCTTCCGA
GGTGAGACAG ATACTATCAA TGCTGCGAAC GCGGAATACA AAGCCTTTGC TACCAACCCA
GAATTGGCAC AACTGAAAGC AGAAATCAAA GCCTACCGCG AAGCGTATCA GCAAGAAGAA
AATGCCCATC GCCAAGTGAT GATTGCCGGT CGTGCAGAAC GAAAACAGCA ACGTAAGCAA
GGCGAGCAAA CCTTGAATCC AGAAGATCTA AAAGCGCTAC TGGATGATTT GGGTAAACAA
AGCGTCGCTG AGAAGAATGT ACTCAAGTAC CTCAAACAAG CTTGGGATGA AAAGCTGGCA
ATCAAAGAAG CGCGCTTAGC CGAGCTAGAA CAAAAACTGG CAGAACTTAA AGAGCAGCGC
AAAGACTTGT CTAACGTGCT ACAGCACAAA CTGCATCAAC AATACCGCTT CTTGGATAAC
CACGGCGCAG AGCGCGATTT GGTGGACATT TTTGCTCCGA CCACCAATCC AGTACCACCA
GCGGGTGCGG GAGAATGCGC GGCGCCAAAA CTGCTTCAGT TCGCGTACAA ACATGGTTAT
CAGCCACTTG CATTGGCGGA GTTTTGGTGG GGCGTATCGC CGAAATCTGA AGTGCGTCAG
CACAAGAAAT TCTACCCATC TTGCAACAGC AAATGCCAAC CTATTTTGGG GCATATGCTG
CAAGGCTTGG ATGTGGAACC AAACCCATTA GCAGAGAACT GGGCAGAAGA TAAAGAGCTG
GAAATTCTGT TTCAAGACGA AGCCATGGTG ATCGTCAACA AGCCTTCGGG CCTGCTTTCC
GTTCCGGGCA AAACCATCAA GGATTCGGCG TACACACGCC TGCAAACAAT GTTCCCAGAT
GTCGAAGGGC CGTTCGTGAT TCACCGCTTA GATATGGCGA CGTCGGGGAT TCTCATATTT
GCCTTAACCA AACGAGCAAA CAAGAGCCTG CAAAAACAGT TCATCACTCG CGGTGTACAA
AAGCGCTACA TGGCACTGCT AGAAGGTGTA TTAACCGAGC CTGAAGGTGA AATCTCGCTA
CCGATGCGTG GCGATCCGGA TGACCGTCCA CGTCAACTGG TATGCTTTGA ACACGGTAAA
CCTGCTGAAA CTTACTGGCA GTTGATTGAA GTGAAAGATG GACGTAGCAA GGTGTACATG
TACCCGAAAA CAGGACGAAC CCACCAGCTA CGTGTACACA GCGCGCACCA CATGGGATTG
AACATGGCGA TGGTTGGCGA CGGCTTGTAT GGCGAAAAAG CTAATCGCCT GCATTTGCAT
GCGGAGATGT TGGAGTTGGA CCATCCATAC AGCAAGGAGC GCATGTGTTT CCAAGCAGAG
TGTGAGTTTT AA
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| Protein sequence | MLAAEQLQQH LMTQTDFEHD FGLEGEQNGR GKMFGVLLVR NPQGELGYFS AFSGKIADQN
LLPGFVPPVF DMLTEEGFFR GETDTINAAN AEYKAFATNP ELAQLKAEIK AYREAYQQEE
NAHRQVMIAG RAERKQQRKQ GEQTLNPEDL KALLDDLGKQ SVAEKNVLKY LKQAWDEKLA
IKEARLAELE QKLAELKEQR KDLSNVLQHK LHQQYRFLDN HGAERDLVDI FAPTTNPVPP
AGAGECAAPK LLQFAYKHGY QPLALAEFWW GVSPKSEVRQ HKKFYPSCNS KCQPILGHML
QGLDVEPNPL AENWAEDKEL EILFQDEAMV IVNKPSGLLS VPGKTIKDSA YTRLQTMFPD
VEGPFVIHRL DMATSGILIF ALTKRANKSL QKQFITRGVQ KRYMALLEGV LTEPEGEISL
PMRGDPDDRP RQLVCFEHGK PAETYWQLIE VKDGRSKVYM YPKTGRTHQL RVHSAHHMGL
NMAMVGDGLY GEKANRLHLH AEMLELDHPY SKERMCFQAE CEF
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