Gene VIBHAR_06564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06564 
Symbol 
ID5556662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp1713890 
End bp1715131 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content48% 
IMG OID640911037 
Productglycine betaine ABC transporter ATP-binding protein 
Protein accessionYP_001448682 
Protein GI156977776 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4175] ABC-type proline/glycine betaine transport system, ATPase component 
TIGRFAM ID[TIGR01186] glycine betaine/L-proline transport ATP binding subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTAAGC CACTTATTGA AATCAGCGGG CTGTACAAGA TCTTCGGACC AAAGCCAAAA 
ACAGTCATCG AGCGAGTAAA ACAAGGTCAG AGCAAAGACC AAATTCTGGC TGATACGGGT 
CATACCGTCG GTTTAAAAGA CATCAACCTG CAAATTAACA AAGGCGAGAT CTTCGTTATC 
ATGGGTCTGT CTGGCTCTGG TAAGTCGACC ATGATCCGTC ACTTCAACCG TTTGATTGAC 
CCAACCATGG GACAAATTTT GGTTGAAGGC GTCGACGTGA TGCAGCTGTC TTCAAAAGAG 
TTGGAAGAGT TTCGTCGCCA TAAAATGTCG ATGGTATTTC AACGCTTTGG CCTTTTGCCT 
CATCGCACTG TGGTTGACAA CGTCGCTTAC GGCTTGGAAA TCCAAGGCAT CAAGAAAGAA 
GCACGCATTG CGAAAGCCAA CGAATGGTTA GAGACAGTTG GTCTTAAAGG TTACGAGAAC 
CAATACCCTG CGCAACTTTC CGGCGGCCAG CAACAACGTG TTGGTTTAGC TCGCGCGCTG 
GCGACTGACG CAGAGATCCT ATTGATGGAT GAAGCATTCT CGGCACTCGA CCCGCTGATC 
CGAAGTGAAA TGCAAGATCA GCTGATTGAA CTGCAAGAGA AGCTACATAA GACCATTATA 
TTTATCACTC ACGATTTGGA CGAAGCGCTT CGCTTAGGTG ACCGTATCGC TATTTTGAAA 
GATGGTGAGT TAGTACAGCA AGGTTCTCCA GACGAGATTC TGCTCCACCC TGCCGATGAA 
TATGTAGAAG CCTTCGTTAA GGACGTAAAC CGAGCGAGAG CGCTTACGGT AGAAACCGTA 
ATGCAGCCAC CAGCATATCG CATTGCAGCT ACGACTATCG AAGAAGCCCT TGTCGAGATG 
AAACGCGTGA AGCAAGACTA CGCGTACCAC GTGACCGACG AAGGCTATCA AGGTGTCGTT 
ACCAAAGAGA GCTTACTAGA CGCCGCGAAG ACGGATGCCG CGCAAGAGCT GGCAGAAGAG 
ATCTACGAAG AAGTGCCTGT TGTCTCTCCG GATTCCGTAA TTGAAGAAGT GCTACCAGAC 
ACCATGTCTT GTGACTACTC ACTGCCGGTT GTGGATGACG AAGGTAATTT ACAAGGTGAA 
CTAGAACGTA GCGCCGTAGC TGAAATCTTT ACTGATAATA CCGAAGAGGT GTCGCCGCCA 
AAGGAGGTAA AAACGCCTCC AGTAATGGAT AAGGCATCTT AA
 
Protein sequence
MTKPLIEISG LYKIFGPKPK TVIERVKQGQ SKDQILADTG HTVGLKDINL QINKGEIFVI 
MGLSGSGKST MIRHFNRLID PTMGQILVEG VDVMQLSSKE LEEFRRHKMS MVFQRFGLLP 
HRTVVDNVAY GLEIQGIKKE ARIAKANEWL ETVGLKGYEN QYPAQLSGGQ QQRVGLARAL 
ATDAEILLMD EAFSALDPLI RSEMQDQLIE LQEKLHKTII FITHDLDEAL RLGDRIAILK 
DGELVQQGSP DEILLHPADE YVEAFVKDVN RARALTVETV MQPPAYRIAA TTIEEALVEM 
KRVKQDYAYH VTDEGYQGVV TKESLLDAAK TDAAQELAEE IYEEVPVVSP DSVIEEVLPD 
TMSCDYSLPV VDDEGNLQGE LERSAVAEIF TDNTEEVSPP KEVKTPPVMD KAS