Gene VIBHAR_06455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06455 
Symbol 
ID5557074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand
Start bp1612360 
End bp1614504 
Gene Length2145 bp 
Protein Length714 aa 
Translation table11 
GC content53% 
IMG OID640910928 
ProductRTX toxin transporter 
Protein accessionYP_001448573 
Protein GI156977667 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID[TIGR01846] type I secretion system ABC transporter, HlyB family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTAGGG CTTACCCAAA ACGGGATGCG CTGTCGCACA GTGCTGTCGT AAGCTCTCAG 
GTTTTGCTCA AGCTTTTGGG CGTCTCTTGT CAAATGCCAA CAGAGCATCC AGGAGGCGAT
CTAAAAGGCT GGCTCAAGAA AGCGTCAGGT CAAACTGATG GTCAACTGAG ATTAAAACGA
CTCTCAGAAA ACACACTCAC GGCTTCACAT TTGCCTCTTG CGTATCAACA GCACGATGGC
GAATTTGTGG TGCTCGCTCG ATTGTCTGAT GACCAAGCGT TGATCCAACG TCATCACGAG
CAAACCCCCC AAGTCATCTC AAGAACCACG CTTGAAGAAG CCTGGGCAGG CCAAGTGATC
CAATATCACG AAAGCGGGCG TCAGTTTGAT ATTCGCTGGT TTATCCCGGA GTTTATTCGA
CATCGTGGCT TACTGGGCGA AATCCTGTTC TTTTCCCTCC TCCTTCAGAT GCTCGCACTG
GTGCTCCCAC TATTTTTCCA AGTGATCATG GACAAAGTGC TGGTGCACAA TGCGCTGTCG
ACACTTGACG TGTTAGTTGT GGCATTGGTG GTGGTCGGTC TCTTCGAAGT GATATTGAAA
GGACTGCGGG AATATTTGTT GGCGCACACC ACGACGCGTA TCGACATTCG GCTTGGCACA
AAACTCTTTA AACACTTACT TGGGCTGCCC CTGCTTTACT TCAAAAATCG CCATGTGGGC
GCGATCGTCA CTCGAGTTCG TGAGCTCGAC AGTATTCGAA ACCTGCTCAC CGGCGCGGCG
TTAACTTTGT TGGTGGATGT CAGTTTTACC TTTGTTTTCC TGGGTGTGAT GGTCTATTTG
TCTGCACCTC TGACGGCACT CGTCATCGCG ACCTTGCCAC TGTATGCCTT GCTTGCATGG
GCGACGTCCG AGCCACTCAA GCGCCGTATC GAGCACCAGT TCGCTTGTGG GGCCAAAAAC
ACCGCCTTTT TGACGGAATC GCTCAATGGC GTGGAGACAG TGAAAAGTCT GGCCCTAGAA
CCCCGGTTTG AACGCCGCTG GGAAGGACAG ACTCAAGAAC TGGTTGCGGC CAACTTTTCG
CGTCAAAGTT TCCAAGCGCA AGTCAGTCAA TGCGTCACAC TATTGCAAAA AGTCACCTCG
GTTGGTGTCC TCTGGCTGGG CGCCCAGATG GTGATGTCTT TGGAATTGAC GATTGGTCAG
TTGATTGCGT TTAATATGAT GGTCAACCAT GTGAGTCAGC CCCTCGCCAA ACTCGTAGAA
CTTTGGCAGC AGTTTATCCA AACACGCGTT GCCGTCGACA ACCTGAGTGA AATGCTCAAT
CTGCCTGCGG AACAAGAGAT GGGCGAGTTC CAACCTAACG CACCAATCCA AGGGCACATC
GAGTTTCAAC AAGTGTGGTT TCGCTACCAG CCGCAACTGG CACCAGTGTT ACATGGCCTC
TCTTTAACGA TCAAACCGGG CGAGTCTATC GGATTGGTGG GGCCTTCTGG CTCTGGAAAA
AGTACCGTGA CGCGCCTTAT TCAAAAACTC TACCTGGCCG AAAAAGGCCA AGTCCTGATC
GATGGTACGC CACTCAATCA ATGGTCTGCT GCGGCCCTCA GGCAGGGCAT TGGCGTGGTG
TTGCAAGAAA ACTATTTGTT CCACCGAACG GTCCGGGAAA ACATCGCCAT CCGACAACCG
ACCGCGTCGT TTGAGGCGGT GGTTGAGGCT GCCAAACTCG CAGGCGCTCA CGAGTTCATC
ATTAAAATGC CCAAAGGCTA TGACACCCTG CTGGCAGAAG GGGGGGCGTC GTTATCCGGG
GGCCAGAAAC AACGAATCGC GATCGCTCGC GCGTTAATGA CCCAGCCGCG CATCCTTATT
TTTGACGAGG CCACTAGCGC TTTGGACGAA GAGTCCCAAC GCATCGTCAA CCAGAACATG
GCGAAGATCG CCCGGGGACG AACGGTGATC ACCGTCGCCC ATCGCCTATC GGCGGTTCAG
GGTTGCGATC GCATCGCGGT CATTGAACAA GGGGAAGTGA CGGAGTTGGG TAACCATCAA
CACTTGTTAG CCCAACAAGG CTGCTACGCC CGGTTATGGC ATATCCAGCA AAACAAACAA
GTGGAATCTG TAGGTGAAGA GGTGTTGCCA TGTTCCCAAT CATAG
 
Protein sequence
MVRAYPKRDA LSHSAVVSSQ VLLKLLGVSC QMPTEHPGGD LKGWLKKASG QTDGQLRLKR 
LSENTLTASH LPLAYQQHDG EFVVLARLSD DQALIQRHHE QTPQVISRTT LEEAWAGQVI
QYHESGRQFD IRWFIPEFIR HRGLLGEILF FSLLLQMLAL VLPLFFQVIM DKVLVHNALS
TLDVLVVALV VVGLFEVILK GLREYLLAHT TTRIDIRLGT KLFKHLLGLP LLYFKNRHVG
AIVTRVRELD SIRNLLTGAA LTLLVDVSFT FVFLGVMVYL SAPLTALVIA TLPLYALLAW
ATSEPLKRRI EHQFACGAKN TAFLTESLNG VETVKSLALE PRFERRWEGQ TQELVAANFS
RQSFQAQVSQ CVTLLQKVTS VGVLWLGAQM VMSLELTIGQ LIAFNMMVNH VSQPLAKLVE
LWQQFIQTRV AVDNLSEMLN LPAEQEMGEF QPNAPIQGHI EFQQVWFRYQ PQLAPVLHGL
SLTIKPGESI GLVGPSGSGK STVTRLIQKL YLAEKGQVLI DGTPLNQWSA AALRQGIGVV
LQENYLFHRT VRENIAIRQP TASFEAVVEA AKLAGAHEFI IKMPKGYDTL LAEGGASLSG
GQKQRIAIAR ALMTQPRILI FDEATSALDE ESQRIVNQNM AKIARGRTVI TVAHRLSAVQ
GCDRIAVIEQ GEVTELGNHQ HLLAQQGCYA RLWHIQQNKQ VESVGEEVLP CSQS