Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_06455 |
Symbol | |
ID | 5557074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | - |
Start bp | 1612360 |
End bp | 1614504 |
Gene Length | 2145 bp |
Protein Length | 714 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640910928 |
Product | RTX toxin transporter |
Protein accession | YP_001448573 |
Protein GI | 156977667 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTAGGG CTTACCCAAA ACGGGATGCG CTGTCGCACA GTGCTGTCGT AAGCTCTCAG GTTTTGCTCA AGCTTTTGGG CGTCTCTTGT CAAATGCCAA CAGAGCATCC AGGAGGCGAT CTAAAAGGCT GGCTCAAGAA AGCGTCAGGT CAAACTGATG GTCAACTGAG ATTAAAACGA CTCTCAGAAA ACACACTCAC GGCTTCACAT TTGCCTCTTG CGTATCAACA GCACGATGGC GAATTTGTGG TGCTCGCTCG ATTGTCTGAT GACCAAGCGT TGATCCAACG TCATCACGAG CAAACCCCCC AAGTCATCTC AAGAACCACG CTTGAAGAAG CCTGGGCAGG CCAAGTGATC CAATATCACG AAAGCGGGCG TCAGTTTGAT ATTCGCTGGT TTATCCCGGA GTTTATTCGA CATCGTGGCT TACTGGGCGA AATCCTGTTC TTTTCCCTCC TCCTTCAGAT GCTCGCACTG GTGCTCCCAC TATTTTTCCA AGTGATCATG GACAAAGTGC TGGTGCACAA TGCGCTGTCG ACACTTGACG TGTTAGTTGT GGCATTGGTG GTGGTCGGTC TCTTCGAAGT GATATTGAAA GGACTGCGGG AATATTTGTT GGCGCACACC ACGACGCGTA TCGACATTCG GCTTGGCACA AAACTCTTTA AACACTTACT TGGGCTGCCC CTGCTTTACT TCAAAAATCG CCATGTGGGC GCGATCGTCA CTCGAGTTCG TGAGCTCGAC AGTATTCGAA ACCTGCTCAC CGGCGCGGCG TTAACTTTGT TGGTGGATGT CAGTTTTACC TTTGTTTTCC TGGGTGTGAT GGTCTATTTG TCTGCACCTC TGACGGCACT CGTCATCGCG ACCTTGCCAC TGTATGCCTT GCTTGCATGG GCGACGTCCG AGCCACTCAA GCGCCGTATC GAGCACCAGT TCGCTTGTGG GGCCAAAAAC ACCGCCTTTT TGACGGAATC GCTCAATGGC GTGGAGACAG TGAAAAGTCT GGCCCTAGAA CCCCGGTTTG AACGCCGCTG GGAAGGACAG ACTCAAGAAC TGGTTGCGGC CAACTTTTCG CGTCAAAGTT TCCAAGCGCA AGTCAGTCAA TGCGTCACAC TATTGCAAAA AGTCACCTCG GTTGGTGTCC TCTGGCTGGG CGCCCAGATG GTGATGTCTT TGGAATTGAC GATTGGTCAG TTGATTGCGT TTAATATGAT GGTCAACCAT GTGAGTCAGC CCCTCGCCAA ACTCGTAGAA CTTTGGCAGC AGTTTATCCA AACACGCGTT GCCGTCGACA ACCTGAGTGA AATGCTCAAT CTGCCTGCGG AACAAGAGAT GGGCGAGTTC CAACCTAACG CACCAATCCA AGGGCACATC GAGTTTCAAC AAGTGTGGTT TCGCTACCAG CCGCAACTGG CACCAGTGTT ACATGGCCTC TCTTTAACGA TCAAACCGGG CGAGTCTATC GGATTGGTGG GGCCTTCTGG CTCTGGAAAA AGTACCGTGA CGCGCCTTAT TCAAAAACTC TACCTGGCCG AAAAAGGCCA AGTCCTGATC GATGGTACGC CACTCAATCA ATGGTCTGCT GCGGCCCTCA GGCAGGGCAT TGGCGTGGTG TTGCAAGAAA ACTATTTGTT CCACCGAACG GTCCGGGAAA ACATCGCCAT CCGACAACCG ACCGCGTCGT TTGAGGCGGT GGTTGAGGCT GCCAAACTCG CAGGCGCTCA CGAGTTCATC ATTAAAATGC CCAAAGGCTA TGACACCCTG CTGGCAGAAG GGGGGGCGTC GTTATCCGGG GGCCAGAAAC AACGAATCGC GATCGCTCGC GCGTTAATGA CCCAGCCGCG CATCCTTATT TTTGACGAGG CCACTAGCGC TTTGGACGAA GAGTCCCAAC GCATCGTCAA CCAGAACATG GCGAAGATCG CCCGGGGACG AACGGTGATC ACCGTCGCCC ATCGCCTATC GGCGGTTCAG GGTTGCGATC GCATCGCGGT CATTGAACAA GGGGAAGTGA CGGAGTTGGG TAACCATCAA CACTTGTTAG CCCAACAAGG CTGCTACGCC CGGTTATGGC ATATCCAGCA AAACAAACAA GTGGAATCTG TAGGTGAAGA GGTGTTGCCA TGTTCCCAAT CATAG
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Protein sequence | MVRAYPKRDA LSHSAVVSSQ VLLKLLGVSC QMPTEHPGGD LKGWLKKASG QTDGQLRLKR LSENTLTASH LPLAYQQHDG EFVVLARLSD DQALIQRHHE QTPQVISRTT LEEAWAGQVI QYHESGRQFD IRWFIPEFIR HRGLLGEILF FSLLLQMLAL VLPLFFQVIM DKVLVHNALS TLDVLVVALV VVGLFEVILK GLREYLLAHT TTRIDIRLGT KLFKHLLGLP LLYFKNRHVG AIVTRVRELD SIRNLLTGAA LTLLVDVSFT FVFLGVMVYL SAPLTALVIA TLPLYALLAW ATSEPLKRRI EHQFACGAKN TAFLTESLNG VETVKSLALE PRFERRWEGQ TQELVAANFS RQSFQAQVSQ CVTLLQKVTS VGVLWLGAQM VMSLELTIGQ LIAFNMMVNH VSQPLAKLVE LWQQFIQTRV AVDNLSEMLN LPAEQEMGEF QPNAPIQGHI EFQQVWFRYQ PQLAPVLHGL SLTIKPGESI GLVGPSGSGK STVTRLIQKL YLAEKGQVLI DGTPLNQWSA AALRQGIGVV LQENYLFHRT VRENIAIRQP TASFEAVVEA AKLAGAHEFI IKMPKGYDTL LAEGGASLSG GQKQRIAIAR ALMTQPRILI FDEATSALDE ESQRIVNQNM AKIARGRTVI TVAHRLSAVQ GCDRIAVIEQ GEVTELGNHQ HLLAQQGCYA RLWHIQQNKQ VESVGEEVLP CSQS
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