| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06193 |
|---|
| Symbol | |
|---|
| ID | 5558400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 1372338 |
|---|
| End bp | 1373609 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640910667 |
|---|
| Product | flp pilus assembly ATPase CpaF |
|---|
| Protein accession | YP_001448312 |
|---|
| Protein GI | 156977406 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTA ACAAAGACTT ATACCTCGCG TTTCGTGGTC AGATATTCGA AGCGCTAGAC
GCCGAAGCGG TTCAGAAAAT GAGCCGCCGT GACCTCGAAT CACAAATACA AGCCGCAGTT
GATCTGCTAG CCAATAATTA CCAGCGTCCG ATTACGTCTA TGACGAAGTC TGGGTTGGTG
AAAAGTCTGA TTGATGAGCT GCTTGGTTTG GGGCCATTAC AACCATTAGT GGAAGATCAG
TCGATCTCAG ACATCATGGT GAACGGGCCA AATAACATCT TCTTCGAACG ACACGGTAAG
GTACAAAAAT CAGAAGTCTC GTTTGTCAAT GAAGAGCAGT TATTGGCGAT CGCAAAACGT
ATTGCATCGC GTGTTGGCAG ACGTGTGGAT GAGTTGTCTC CAACAGTTGA TGCAAGGCTT
GAAGACGGCA GTCGTGTAAA CATAGTTATT CCACCGATTG CTTTGGACGG AACCTCAATT
TCTATCCGTA AGTTCAGAGA ACAGAACATT GGCTTCGAGG ATTTAATTGG TTTTGGCTCT
ATGTCTCCAG ACATGGCAAG AGTTTTGATG ATCGCTTCCC GCTGTCGAAT AAATATTCTT
ATTTCAGGCG GCACCGGCTC CGGCAAAACC ACACTACTCA ATGCACTATC TCAGTATATT
GCAGAAGATG AGCGTATTAT AACGATTGAG GATGCAGCTG AGCTTCGTTT GCAACAACCA
AACTTGGTTC GATTAGAAAC GCGAACCTCC AGCGTTGAAC AAACTGGTGC GGTGAACCAG
CGTGATTTGG TTATCAATGC GCTGCGTATG CGCCCAGATC GAATCATTCT TGGTGAGTGT
CGTGGTTCTG AAGCATTTGA AATGCTGCAA GCGATGAACA CCGGCCACGA TGGTTCAATG
TCGACGTTGC ACGCCAATAC ACCACGTGAT GCGATTGCTC GTGTTGAATC CATGGTCATG
ATGGCGAACC TAAACCAACC TCTTGATGCA ATTCGAAGAA CAATCGTCAG TGCGGTGCAA
ATGATCGTGC AGGTTAACCG ACTGCGCGAT GGCTCTCGTA AGATAACCAG TATATCTGAA
ATCGTTGGTT TAGAGGGCGA TAGCGTAGTG ATGGAAGAGA TCTACCGTTT CCGTTACGAC
GATACCCACT TTGGGGAAAC CGTTAAAGGT GACTTTGTAA CGAGTGGCAT CATGCAACGA
TCTGAGCTTG TGAAAAAAGC CCAATTCTTC GGGCTTTATG ATGAGCTTAT GGCATCGTTT
AAGGGGATAT AG
|
|---|
| Protein sequence | MSSNKDLYLA FRGQIFEALD AEAVQKMSRR DLESQIQAAV DLLANNYQRP ITSMTKSGLV
KSLIDELLGL GPLQPLVEDQ SISDIMVNGP NNIFFERHGK VQKSEVSFVN EEQLLAIAKR
IASRVGRRVD ELSPTVDARL EDGSRVNIVI PPIALDGTSI SIRKFREQNI GFEDLIGFGS
MSPDMARVLM IASRCRINIL ISGGTGSGKT TLLNALSQYI AEDERIITIE DAAELRLQQP
NLVRLETRTS SVEQTGAVNQ RDLVINALRM RPDRIILGEC RGSEAFEMLQ AMNTGHDGSM
STLHANTPRD AIARVESMVM MANLNQPLDA IRRTIVSAVQ MIVQVNRLRD GSRKITSISE
IVGLEGDSVV MEEIYRFRYD DTHFGETVKG DFVTSGIMQR SELVKKAQFF GLYDELMASF
KGI
|
|---|
| |