| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06179 |
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| Symbol | |
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| ID | 5558185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009784 |
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| Strand | - |
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| Start bp | 1357935 |
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| End bp | 1359644 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640910653 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001448298 |
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| Protein GI | 156977392 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACAAC ACTACGATTA CATCATCGTC GGTGCTGGCT CGGCAGGCTG TGTTTTGGCG
GATCGCCTGA GTGAAAGCGG TCAGCACCAA GTCTTGCTGT TGGAAGCGGG TGGCTCAGAC
AAGAGCATCT TCATTCAAAT GCCAACGGCG CTGTCATACC CAATGAACAC CGAAAAGTAC
GCATGGCAGT TCGAAACTGT TGCGGAAGAG GGGTTAGACG GACGTCAACT GCATTGTCCA
CGCGGCAAAG TGTTAGGCGG AAGCTCTTCG ATCAACGGCA TGGTTTACGT TCGTGGTCAT
GCCTGTGACT TTGACGAATG GGAAGCAGAA GGCGCGAAAG GCTGGAACTA CCAAGCTTGT
CTACCGTACT TCCGTAAAGC GGAAACGTGG ACAGGCGGCG CAGACGAATA CCGTGGCGGC
AGCGGTCCGG TAGGGACGTG TAACGGCAAC GATATGAAGC TGAATCCACT TTACCAAGCG
TTTATTGAAG CTGGCAAAGA TGCAGGCTAC CCAGAAACGC AAGATTACAA CGGTTACCAG
CAAGAGGGCT TTGGTCCGAT GCATATGACG GTAGATAAAG GCGTGCGCGC TTCTACCTCT
AACGCTTACT TAAGCCGTGC AAAAAAACGA AGTAATTTCA CCTTGATGAA AGGCGTAACG
GCTCATCGAA TTTTGCTTGA AGGCAAGAAA GCGGTCGGTA TCGAGTTCGA GCAATCTGGC
GAAATCAAAC AGTGCTTTGC CAACAAAGAG GTTGTGTCGA GCGCAGGTTC TATCGGCTCG
GTACAACTGC TGCAACTTTC GGGTATTGGT CCTAAGACTG TGCTTGATAA AGCGGGCATT
GAAGTGAAAC ACACACTAGA AGGCGTGGGT AAGAACCTTC AAGACCACCT TGAAGTGTAC
TTCCAGTACC ACTGTAAACA GCCGATCACG CTTAACAGCA AGTTAGGTTT GATCAGCAAA
GGTTTGATTG GTACGGAGTG GATTCTGACG CGCAAGGGTT TGGGGGCAAC TAACCACTTT
GAATCGTGCG CGTTCATCCG TTCTCGTGAA GGATTGAAAT CGCCAAATAT TCAATTTCAC
TTCTTACCAG CCGCCATGCG TTATGACGGA CGCGCGGCAT TTGATGGTCA CGGCTTCCAA
GTACATGTTG GTCCAAACAA GCCAGAGAGT CGCGGTAGTG TCGAAGTGGT TTCTGCCAAT
CCAAATGACA AACCAAAAAT CGAGTTCAAC TACATCTCTA CGGAACAAGA TAAGCAAGAT
TGGCGAGACT GTATTCGTCT AACGCGTGAA ATCCTCAATC AACCTGCAAT GGATGCGTTC
CGCGGTGAAG AAATTCAACC CGGTCTTAAC ATCACCAGTG ACGAAGCGAT TGGTGAATGG
GTGAAGCAAA ATGTAGAAAG TGCTTACCAC CCATCGTGTA GCTGCAAAAT GGGCTCGAAC
GATGACCCAA TGGCAGTTCT GAATGAAGCT TGCCAAGTGC GAGGCATTGA AGGCTTGCGC
GTGGTGGATT CATCCATCTT CCCAACCATT CCGAATGGGA ACTTAAACGC ACCAACTATC
ATGGTTGCAG AGCGTGCTGC GGACATGATC TTGGGTAATA CCCTTGAACA ATCGAATAAC
ACACCGGTTT GGATTGCTCC GAACTGGCAA GAGACGCAAA GAATGCGTCC GCCGAAAAGA
GACTTAAGCT CGATCTCTTC TATCGCTTAA
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| Protein sequence | MQQHYDYIIV GAGSAGCVLA DRLSESGQHQ VLLLEAGGSD KSIFIQMPTA LSYPMNTEKY
AWQFETVAEE GLDGRQLHCP RGKVLGGSSS INGMVYVRGH ACDFDEWEAE GAKGWNYQAC
LPYFRKAETW TGGADEYRGG SGPVGTCNGN DMKLNPLYQA FIEAGKDAGY PETQDYNGYQ
QEGFGPMHMT VDKGVRASTS NAYLSRAKKR SNFTLMKGVT AHRILLEGKK AVGIEFEQSG
EIKQCFANKE VVSSAGSIGS VQLLQLSGIG PKTVLDKAGI EVKHTLEGVG KNLQDHLEVY
FQYHCKQPIT LNSKLGLISK GLIGTEWILT RKGLGATNHF ESCAFIRSRE GLKSPNIQFH
FLPAAMRYDG RAAFDGHGFQ VHVGPNKPES RGSVEVVSAN PNDKPKIEFN YISTEQDKQD
WRDCIRLTRE ILNQPAMDAF RGEEIQPGLN ITSDEAIGEW VKQNVESAYH PSCSCKMGSN
DDPMAVLNEA CQVRGIEGLR VVDSSIFPTI PNGNLNAPTI MVAERAADMI LGNTLEQSNN
TPVWIAPNWQ ETQRMRPPKR DLSSISSIA
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