Gene VIBHAR_06178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06178 
Symbol 
ID5558184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand- 
Start bp1356954 
End bp1357883 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content48% 
IMG OID640910652 
Productglycine betaine/L-proline ABC transporter glycine betaine/L-proline-binding 
Protein accessionYP_001448297 
Protein GI156977391 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAAA TCTTTTCATC TATCGCGCTG AGTGCAGTAG CGACAGGTGC TTACGCTAAC 
CAATGTGAAA CCGTTCGATT TGCCGATGTA GGCTGGACGG ACATTACAGC GACCACTGCT 
GTTACCTCTG AACTGTTAAA AGGCTTGGGC TACAAAACCA AGACCGATCT TCTGTCTGTA 
CCAGTGACGT ACTCTTCAAT GGCAAACGGC GACATTGACG TATTCCTAGG TAACTGGATG 
CCAACCATGG AAGGCGATAT CGCCAAGTAC CGTGAAGCTG GCACAGTGGA AACCGTTCGC 
GCAAACCTTG AAGGCGCAAA ATACACACTA GCTGTGCCAA AGTACGTGTA TGACGCTGGC 
GTGAAAAGCT TTGCTGACTT GGCAAAAAAT GCTGACAAAT TTAAAGACCG CATCTACGGG 
ATTGAGCCGG GCAACGATGG CAACCGTTTG ATCCAAGATA TGATCGACAG CGATGCATTC 
GGCTTGAAAG ACTTCAGCCT AGTGGAATCA AGCGAAGCGG GCATGGTGTC TCAAGTGTCT 
CGTGCAGTGC GCCGTAACCA ATGGATCGTT TACCTAGGTT GGGCTCCGCA CCCAATGAAC 
AGCAATGTGG AGATGGAATA CCTATCTGGC GGTGACGACT TCTTTGGTCC TAACTACGGT 
GGTGCAAATG TCTACACCAA TGTGCGCCAA GACTACCTAT CTGAGTGTCA AAACGTGGGT 
CAACTGCTTA AGAATCTAGA GTTCAGCTTA GAGATGGAAA ACCAGTTGAT GGAAGCGATT 
CTGAATCAAA AACAAAAGCC AGCGAAAGCA GCGCAAGAAT GGTTGAACGC TAACCCACAA 
CAACTTGAAG CGTGGCTAGA AGGCGTTAAG ACGCTGGACG GCAAAGACGC AAAACAAGCG 
ATTACTTCTT ACCTAAAAAC AAACGCTTAA
 
Protein sequence
MTKIFSSIAL SAVATGAYAN QCETVRFADV GWTDITATTA VTSELLKGLG YKTKTDLLSV 
PVTYSSMANG DIDVFLGNWM PTMEGDIAKY REAGTVETVR ANLEGAKYTL AVPKYVYDAG 
VKSFADLAKN ADKFKDRIYG IEPGNDGNRL IQDMIDSDAF GLKDFSLVES SEAGMVSQVS 
RAVRRNQWIV YLGWAPHPMN SNVEMEYLSG GDDFFGPNYG GANVYTNVRQ DYLSECQNVG 
QLLKNLEFSL EMENQLMEAI LNQKQKPAKA AQEWLNANPQ QLEAWLEGVK TLDGKDAKQA 
ITSYLKTNA