Gene VIBHAR_06176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06176 
Symbol 
ID5558182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand- 
Start bp1354863 
End bp1356047 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content47% 
IMG OID640910650 
ProductATP-binding component of ABC transporter 
Protein accessionYP_001448295 
Protein GI156977389 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4175] ABC-type proline/glycine betaine transport system, ATPase component 
TIGRFAM ID[TIGR01186] glycine betaine/L-proline transport ATP binding subunit
[TIGR03415] choline ABC transporter, ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGCAA TTACGATTGA AAACCTCGAC GTTGTGTTTG GTCAGCAGCA AGAGCAAGCA 
TTGGCGCTTT TAGACCAAGG TAAGTCTCGC CAAGAGATCA TTGATGAAAC CGGACAAGTG 
GTTGGTGTTG ATAAGGTCTC AATGAGCGTC AAACAAGGTG AGATCTGTGT ATTGATGGGG 
CTTTCCGGTT CGGGTAAATC CAGCCTCCTT CGTGCTGTTA ATGGTTTGAA TGAGATCTCT 
CGTGGTTCAC TCAAAATCAA AGATGGCGAC GACATGGTAG AGCTTGCCAA CTGTGACGAA 
CAAACTCTAC GTAACCTGCG TACTCATCGC GTGTCGATGG TGTTCCAAAA GTTTGCGCTT 
ATGCCGTGGT TAACGGTATT GGATAACGTG GCGTTTGGTC TTGAGATGCA GGGCATTGGC 
AAAGCGGAAC GTCGAAAAAA AGCGCGTGAA CAACTTGAAA TGGTTGGGCT GAGCGAGTGG 
GAGAGTAAGT TCCCGCATGA GCTTTCCGGC GGTATGCAAC AGCGTGTTGG CTTGGCTCGC 
GCCTTTGCTA TGGATACCGA TATCTTACTA ATGGATGAAC CGTTTTCCGC GCTCGATCCT 
CTGATTCGTG CTCAGCTTCA AGATGAATTG ATTCAATTGC AAGAGAAACT CAACAAGACG 
ATTTTGTTTG TGAGTCACGA CCTAGACGAA GCGCTGAAAA TCGGCAACAA CATCGCCATT 
ATGGAATCGG GTAAACTGAT TCAACACGGC AAGCCTGAGC AAATCATCCT TGCGCCAGAA 
AACGAATATG TAGCAGATTT TGTTGCTCAC ACTAATCCGC TCAACGTATT GAGAGGTCGT 
TCACTGATGC AAGCCAGCAC AGAGCTTAAG CAGCAGAATG ACCGCGTATT GGTGTGTGCA 
GATAAACAGA TTTGGGTCGA GCAAGAGCCG AAAGGCTTAA TTCTAGTGGA TTCCGATAAG 
TCGTTGGTGA ACTGGGAAAG CGATTCAACC ACACTCGACG ACATCGGCAA AAGCACGGTC 
GTTCAAGCCA ATCCAGATAT CAGCATGCGT GAAGCGATTG AACTGAAGCA ACGCAGCAAT 
CAACCTATCT TGCTAGTAGA AGAGAACAAG TTAGTGGGCG TATTGAGTGA TAACGAGTTA 
TACGATGCGC TGCTTGGCAA CTTTACGTCT AAGCAAGTGG CGTAG
 
Protein sequence
MDAITIENLD VVFGQQQEQA LALLDQGKSR QEIIDETGQV VGVDKVSMSV KQGEICVLMG 
LSGSGKSSLL RAVNGLNEIS RGSLKIKDGD DMVELANCDE QTLRNLRTHR VSMVFQKFAL 
MPWLTVLDNV AFGLEMQGIG KAERRKKARE QLEMVGLSEW ESKFPHELSG GMQQRVGLAR 
AFAMDTDILL MDEPFSALDP LIRAQLQDEL IQLQEKLNKT ILFVSHDLDE ALKIGNNIAI 
MESGKLIQHG KPEQIILAPE NEYVADFVAH TNPLNVLRGR SLMQASTELK QQNDRVLVCA 
DKQIWVEQEP KGLILVDSDK SLVNWESDST TLDDIGKSTV VQANPDISMR EAIELKQRSN 
QPILLVEENK LVGVLSDNEL YDALLGNFTS KQVA