| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06147 |
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| Symbol | |
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| ID | 5556620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009784 |
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| Strand | + |
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| Start bp | 1325795 |
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| End bp | 1328131 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640910621 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001448267 |
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| Protein GI | 156977361 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAA GCAACAGAGT CGTTTTGCTT GTCGCCCCTG TCATTCTAAT TAGCGCGCTG
GTGTCGAGTT ACATCATCTA TAGCATTCAA AAAGTCACGC TAATCAAAAG GGAAGACAGC
TATATCCAGC TACAAATGGA AAAGCTAGCT GGTCAGTTTC GCCAAGCCAA TATTTTTCTT
AACAGCTATG CCTACACCTT GAGTAAAAGC GAGGTGCTGC AAGATTATTT TGTGAATCAT
GATAACCACT ATCGTGAGAG GCAACTATTC AAACGTTTAG ATGAAACCAT CGAGGTACTC
AGTCACGGGT ATCGAGGGGA TGCAAATATG GCGATCCTCG ACGGTAGGCA AGACCTCCTC
TACTACACCG AAAATCAATA TTACGAATCA AACGGTCGAG TCGACCCCAA GATCCTTGAG
TATGTCGACA AAAGCTTTAA AACCAATGGA GACGTAAGCC ATACCGGTTT TATTTACAAC
AGCAGCGGAC AGAGCATTCT ATTGCAATAC GAGCTGTTTG ATAAACGTAC CGGAGAGCAC
CCTTTAAGCT TCGACCCACA AAATGTTTTC TTTGTTATCG TGTCTGTCTC ACTCGAAGCG
TTTAATGACA TCAAGCATGA GATTGAGTTT GATACGCACA GCGTGATTAC GTTTTCAGAT
AAGCCGATTA TCTTAGATAT TCCCCTTGCT CAAACCATCC AGTTTCTGCC TCACTTCTAT
GCCATTTTAT CGCCAGCAGA ATATCTGATG TGGAATAAGG TCGATAAGGT CTGGTTAGAG
CTAGCATTGT CTTTTGGTAT CGCATCTTTT TGTACCATTA CTTTAATTGT CTTAGTCCTT
TACCGCTATG TTCTGAGTCC AGTCTCTAGG CTAGACAAAC AGTTGAGAGA AATCGAAGCC
AACAAACGCG CAAATATTGA AAAGCTCGAT ACTGATGATG AGATTGGACG CCTTTCTTCC
CGCTTCTTTG ATATGTACGA AGAGCTGAAC AACGTCTACC ACAAAACTAA GCGTTTAGCG
GAAACTGATC ACTTAACTCA ACTGGCTAAT CGCCACCGCT TCCATGAGCT TGCAAGCCAA
GAGCTGGCAG AACCCTCAGA GCAGATTTGG GTGATTTATA TCGACCTAGA TAACTTTAAA
TACGTCAACG ACAAATACGG CCACGAACTG GGTGACAAGT TATTGCAGGT CTTCTCCAAA
CACATCCGAA ATGCGTGCCA GAAGTTCACT CAGCAGTACA ATAGCCCATG TTTCGGGGCA
CGTTTATCCG GTGATGAATT TGCAATCCTA CTCAGCTCAA ATCAAGAAAA CAGCGAATTA
CCCGATCTGT TTGCCGCGGA GTTGCTCAAG CCAATTAATA ACTTAACTCA GTCAGCAAAA
AACTCGTTTC CGGTGACAGC CAGCGTGGGT ATCGCTCAAT ATCCAAGAGA TGGTGGTGAT
ATCGCTAAGC TCTTGTCTAG TGCAGACGCG GCAATGTACC AAGCTAAGCG CGCGGGTAAA
AACCAATACG CATACTACTC TGCAGCGCTC AATATCGAGG CTCAACGTCG TAGCCAAATT
GAACGCGCAT TGCGCAAGGC CAACGTTGAA GAAGAGTTTC GTCTTGTTTT CCAACCATAC
ATGAACAGTA ATGCCAACGA GATAGAAGGC TTGGAAGTCC TATTACGTTG GGAAGCAGAA
GGGATCGGCT CAGTACCACC AAACGAGTTC ATCCCTATTG CTGAACAAAC TGGTTTGTTC
GAAAAGATTG ACCGCTGGGT ATTCGCGAAT GCCATGGCAG AATACTATCA GCTGAAAAGC
ATCTTTGGGA AAGACATTAT TTTGTCTATC AACCTATCGT CTGCGGAACT GAACTCGCTG
TCGATGGCAG AATTCATCCA TGAAAAAGCC ACACAGAATG GTGTGCCTAC GCGCTGTATT
GAGCTAGAAA TTACCGAAAC TTTCGCGTCT GACAAGCAAG GTACTGCCCT ACTCGATGAG
TTATCGAAGC TGGGTTACAA ACTGGCAATA GACGACTTTG GATCTGGTTA TACTTCTTTG
ACACAACTAG TGCAGTACCC AGTACAGAAA ATCAAATTTG ACCGAGAGTT CTTGTTGACC
TTAATGAACA CCGATAATGG TCATGTCATT AAACCAATTA TAGAGCTGTG CCACGCACAG
AATAAGAAAG TGACGGCAGA AGGCATTGAG CATAACGTCA TGCACGAATG GCTTTCATCT
TACCGCTGTG ACTTTATGCA GGGTTATTTA TTTGGTAAGC CGATGAACAA AGAACAGCTC
GGCCATTGGT GGAAGTCCGC TAATGATCAG CCATTTAAAA GCACACATAT CGCTTAG
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| Protein sequence | MKLSNRVVLL VAPVILISAL VSSYIIYSIQ KVTLIKREDS YIQLQMEKLA GQFRQANIFL
NSYAYTLSKS EVLQDYFVNH DNHYRERQLF KRLDETIEVL SHGYRGDANM AILDGRQDLL
YYTENQYYES NGRVDPKILE YVDKSFKTNG DVSHTGFIYN SSGQSILLQY ELFDKRTGEH
PLSFDPQNVF FVIVSVSLEA FNDIKHEIEF DTHSVITFSD KPIILDIPLA QTIQFLPHFY
AILSPAEYLM WNKVDKVWLE LALSFGIASF CTITLIVLVL YRYVLSPVSR LDKQLREIEA
NKRANIEKLD TDDEIGRLSS RFFDMYEELN NVYHKTKRLA ETDHLTQLAN RHRFHELASQ
ELAEPSEQIW VIYIDLDNFK YVNDKYGHEL GDKLLQVFSK HIRNACQKFT QQYNSPCFGA
RLSGDEFAIL LSSNQENSEL PDLFAAELLK PINNLTQSAK NSFPVTASVG IAQYPRDGGD
IAKLLSSADA AMYQAKRAGK NQYAYYSAAL NIEAQRRSQI ERALRKANVE EEFRLVFQPY
MNSNANEIEG LEVLLRWEAE GIGSVPPNEF IPIAEQTGLF EKIDRWVFAN AMAEYYQLKS
IFGKDIILSI NLSSAELNSL SMAEFIHEKA TQNGVPTRCI ELEITETFAS DKQGTALLDE
LSKLGYKLAI DDFGSGYTSL TQLVQYPVQK IKFDREFLLT LMNTDNGHVI KPIIELCHAQ
NKKVTAEGIE HNVMHEWLSS YRCDFMQGYL FGKPMNKEQL GHWWKSANDQ PFKSTHIA
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