| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06122 |
|---|
| Symbol | helD |
|---|
| ID | 5556595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 1286312 |
|---|
| End bp | 1288381 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640910596 |
|---|
| Product | DNA helicase IV |
|---|
| Protein accession | YP_001448242 |
|---|
| Protein GI | 156977336 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTTA CCGCCTCTAA TAAAGCACAG TTTTTTATTC AAAATGAGTA TTACCAAGTC
GAAATAAAAG AGAACAGTGT TTTATTAAGT TCAGTGGGTA GTGAAGAGCA CATCCCATTT
ACTATTTGGA ATGGCAAAGT GAGCGTTAAA CGCGGTCTAC TTTGGAGTTC TCTTCAGTTC
TTTGCTCATG AGCAAGATGG CAAGCAACAA AGTTGGCTCG TTCAAGGTTT GTCTTGGCCA
CATTGTCGTA AGTTTGCGGT TGAAGCGGTA CGTCAATATC AAGATTGGCA CAATACCCAG
TGCCGCAAAC TCGCGGAATA CCTTCCTAAG TGGGAAGATG AGTTGTATCA ACTTAAACAC
CTTCCGGCTT ATCTATCGCA TTCAAAAGTT CAAACCTGGG TCGACCAACT CAACAGTGAA
TTAGTTGAAA TCAAAACCAG CTTGGTGGAA GCGAAAATGC GTATGCCCAA GCGAATGGCT
GAGATTGAAC CGTGGCTTTC AGAGACTTCT CAAACGCTGA GCGAGCGAAA TCACGAGTGG
CTTGAGAATG AACGCCCGAA TTGGGAAGTG CTATTTAGCC GGATCGAATC TTCACCATTG
AATCTCTCGC AGCAGCATGC TGTGCTTCTC AATGATGATC ACAACCTTGT TTTAGCGGGG
GCAGGTTCCG GTAAGACGAG TGTACTGACG GCGCGTGTGG CGTATTTACT GCAAAGTCAC
CAAACACAAG CGGAAGAGCT TTTGATGCTA GCCTTTGGTC GTGACGCTGC GAAAGAGATG
AAAGAGCGCT TGGTCGATAA AGTGGGCTTG GCGGCAGAAG GCGTTCGCGT GAATACTTTT
CACCAACTTG GTCTGCGCAT TTTAAACCAA GTTGAACCTC AGCCGGTAGA AATCAGCCCA
CTTGCTTTAG ATGACAATCA ACGTACAGCA TGGTGCATCG ATTGGCTCAA GAAGCACTGG
ATGACACCGA CTAATTTTAA GCGCTGGCAA AAGCACTTAG ATAAGTGGCC GATTGCGTAC
TTGAAAGGTG ATGATGAGCT AGGTAGTCAC TCCGAAAACC CGAAATTGAT CGCTTGGCTA
GACAATCAAC TGTCACAGCT TGCTGCGGTT GGCCTGACTA AAAAGCAAGT GCAAGAAAAG
CTGGTGAATC ACCAAGACTA TACGCGCTTG AACAGTGAGC TTGCACTGTG TTGGCCGTGC
TTTAGTGCGT GGCAAAAAAT GCTAAAAGAG ACCAATCAGG TGGATTTCCC AACGATGATC
AGTCGAGCGA CGGATTACGT TAAAAAAGGG AAATACATTT CGCCTTGGCG CTTTATTATG
GTGGATGAAT ACCAAGATAT CTCTCCTGAC CGTTTAGCGC TTATAGAAGC GCTATGTGAG
TCAACAGAGA AGCAAGCGGG AGCAACCTTA TTTGCTGTCG GCGATGATTG GCAGGCAATT
TATCAGTTTG CAGGGGCCGA TGTGGATCTC ACAACGGGCT TCCAAGATCG ATTCACACAC
TCAACCGTAC ATCATTTAGA CACCACGTAC CGCTTCAACA ACCAAATCGG TGATGTGGCA
AATACCTTTG TACAAGAGAA CCCATCTCAG TTGCCAAAGA CCCTGAACAG TCATAAGCAA
CGTAAGCAGA AGAGCGTGCA TACTGCACCA AGCAATCAAG TTGAGAAGAT TCTTGAACAG
CTTAACCAAC AGGCGAAGAA AACCAAATCA GTATTGCTAC TGGGTCGTAA CCATTACCAC
AAGCCTGATT TATATGATGA CTGGTTGAAG CGATTCCCTA AACTTGAGAT TCGCTTTATG
ACCTGCCACG CGAGTAAGGG CAGGGAAGCA GACTTTGTAA TCATCCTATC TGTGGATGAA
GGCCAGTTCC CAGCGAAGAA GAAGCAAGCG CATATCGATG GGGCGTTGAG TGAATCGAAA
GACAAATATC CGTATGCCGA AGAGCGTCGT TTGTTCTATG TCGCTTTAAC GCGTGCTAAA
GAGAAAGTTT GGATTACCCA TACCGGTGCG GGTTCGGCGT TTGTGCAAGA GTTGGTTAAC
GGCGATTATC CAATCGTCAC TTCAAGATAA
|
|---|
| Protein sequence | MQLTASNKAQ FFIQNEYYQV EIKENSVLLS SVGSEEHIPF TIWNGKVSVK RGLLWSSLQF
FAHEQDGKQQ SWLVQGLSWP HCRKFAVEAV RQYQDWHNTQ CRKLAEYLPK WEDELYQLKH
LPAYLSHSKV QTWVDQLNSE LVEIKTSLVE AKMRMPKRMA EIEPWLSETS QTLSERNHEW
LENERPNWEV LFSRIESSPL NLSQQHAVLL NDDHNLVLAG AGSGKTSVLT ARVAYLLQSH
QTQAEELLML AFGRDAAKEM KERLVDKVGL AAEGVRVNTF HQLGLRILNQ VEPQPVEISP
LALDDNQRTA WCIDWLKKHW MTPTNFKRWQ KHLDKWPIAY LKGDDELGSH SENPKLIAWL
DNQLSQLAAV GLTKKQVQEK LVNHQDYTRL NSELALCWPC FSAWQKMLKE TNQVDFPTMI
SRATDYVKKG KYISPWRFIM VDEYQDISPD RLALIEALCE STEKQAGATL FAVGDDWQAI
YQFAGADVDL TTGFQDRFTH STVHHLDTTY RFNNQIGDVA NTFVQENPSQ LPKTLNSHKQ
RKQKSVHTAP SNQVEKILEQ LNQQAKKTKS VLLLGRNHYH KPDLYDDWLK RFPKLEIRFM
TCHASKGREA DFVIILSVDE GQFPAKKKQA HIDGALSESK DKYPYAEERR LFYVALTRAK
EKVWITHTGA GSAFVQELVN GDYPIVTSR
|
|---|
| |