Gene VIBHAR_05953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05953 
Symbol 
ID5558861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp1140072 
End bp1140992 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content45% 
IMG OID640910427 
ProductABC transporter permease protein 
Protein accessionYP_001448073 
Protein GI156977167 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCGGAC AAACCACCAC TCGCGTTGCA CCAACCAAAA ACAATACAGG TCTTTTCTTA 
AGTCGTTTTA ACCTACTTGA TTGGGTGCTA CTGGCCATCT GTGGATTGGC TGGGGTTTGG 
CTTTATCATC GCTCTACCGT TGGCGTAAAT TACATATGGC ATTGGAAAGA AGCCATTGAC 
CTGTTGTTCA CACCGCGAAC AAACGGTGGC TTACCGTATT TCTTTCAAGG CTTAGCTTCA 
ACACTTCGCC TTAGCATCTG GGGCATCGTA TTCGCGTTGG TACTAGGAAC CTTTCTTGGA 
TTAGCTCGCT TTTCTGATTC AGTATGGCTG CGCACACCTG CCAATGCGTT TATTCAATTG 
GTACGAAACA TTCCTCCTTT AGTGTTCGTC TTCATCTTTT ACTTCTTCAT CTCTAACCAG 
TTAATCCCAC TACTGGGGCT AGAAGACATT TTACGTAACT ACCGTGGCGA ACCTAACGCA 
GTTCAAAGCT TCTTCTTTGG GCCCGCTAAC CTTTGGGAAA ACTTAGCCTC TGGTGTCCTT 
TGTGTTGGTC TACTTTCTTC GGCTTACATC GCAGAAGTCG TGCGTGCTGG ATTGCAAAGC 
GTCGACAAAG GCCAATGGGA AGCCGCAGAT TCGCTCGGAT TATCATCTTG GGTTAAATAC 
CGCTTTGTCA TTGCGCCGCA AGTATTGAAA GCCATTACAC CAGCACTAGC AGGTCAGACC 
ATCTCTCTGG TTAAAGACAC CTCCATCGTA TCTCTCATCT CGATTCAAGA AATGACCTTC 
GTCGGCACCG AGATGGCGAA CTCATCTGGC TACATTTTCG AAATTTGGCT GATTGTCGGC 
TTCGTTTACT TCCTTATTTG TTTCGGTCTA TCAATGTTTT TCAGATATAT CGAGAAAAAA 
TCGGAATCTA ATTCAAATTA A
 
Protein sequence
MSGQTTTRVA PTKNNTGLFL SRFNLLDWVL LAICGLAGVW LYHRSTVGVN YIWHWKEAID 
LLFTPRTNGG LPYFFQGLAS TLRLSIWGIV FALVLGTFLG LARFSDSVWL RTPANAFIQL 
VRNIPPLVFV FIFYFFISNQ LIPLLGLEDI LRNYRGEPNA VQSFFFGPAN LWENLASGVL 
CVGLLSSAYI AEVVRAGLQS VDKGQWEAAD SLGLSSWVKY RFVIAPQVLK AITPALAGQT 
ISLVKDTSIV SLISIQEMTF VGTEMANSSG YIFEIWLIVG FVYFLICFGL SMFFRYIEKK 
SESNSN