| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_05615 |
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| Symbol | |
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| ID | 5558813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009784 |
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| Strand | + |
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| Start bp | 819075 |
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| End bp | 822614 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640910091 |
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| Product | type I site-specific deoxyribonuclease |
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| Protein accession | YP_001447745 |
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| Protein GI | 156976839 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGAGT ACCAATTGGT AGAAAAGCCG CTGCTAAACC AGCTTAAAAG CATGGGCTGG
GATGTGATGG ATTTAGGGCA AGGTGTGCCG ACCGACCCAA CCACCAGTTT TCGCGGCTCT
TTTCGTGAAG TCATCTTAAA AGACATTTTT AAAACCGCAG TACATCGCAT CAACACCACT
GATGATGGTA AGCCCTGGCT GACGGATAGC CAACTCGATG TTTTGCTCGA TGATGTCACC
GACTTTGGTA CTCACGAGTT GCTGGCGGCC AATGAGGAGT TTATTGGCCG TCTACACAAA
TGGCAACTTG ACCGTAACGA GCTGACCGGA GAAGAAGACC CTGTTGTAAA ACTGATTGAT
TTTGATAATT GGAAAAACAA CACCTTCACT GCCATCAATC AGTTCCGTGT TGATACCCCT
GGGTTGGGGA AAGAGCACAT TCGCCCTGAC ATTGTATTGT TCGTCAACGG CCTGCCGCTG
GTGGTGATTG AGTGTAAAGT GCAGTCACAG CATTGCTGCA ACCCAATGGC AGCAGGCATT
GACCAATTGC GCCGGTATGC CGACTTGCGC GAGCCTCAAC ACAGCAAACT GCGCGAGGGT
GAACCCGCTT TGTTCTTTAC CAACCAGTTG ATGATCAGCA CCTATGGAGA TGATTGCAAA
GTGGGCACCA TCACTTCAAA TGAAGATTAC TACTTCAACT GGAAAACCAT CTACCCCGAT
ACTGAGCCCT ATATTGCACC GGAAATTGGC ACCCATCGCA TCCAGGAAAA GCTCGTTCAG
GGCATGCTTC ACCCACAAAG ACTGCTTGAT ATCACTCGTT GTTTTACCCT GTTTATGGAT
ACCGACAACG GCCCACGTGT GAAAGTAATT TGCCGATACC AGCAATTTCG CGCGGTGCAG
AAAATCATTG AGCGTATGGA GCAAGGCGAA ACGGGGATTC AGCGTTCAGG CGTAGTTTGG
CATACCCAGG GAAGCGGAAA AAGCCTGACC ATGGTGTTCT TGGTTCGTAA GCTTCGTCGC
CATCCTGATC TGAAAAGCTA CAAAGTGCTG ATGGTCAACG ACAGAAACGA TCTTGAAGAG
CAGCTCACTA ATACAGCGGC CTTAATTGGT GACAAAGTTG TTGTCATTAA AAATACGAGA
GATGCTAAGG CGGAGCTTGC AAACGATACG TCAAATACCA ATATGGTGAT GGTGCATAAG
TTTCGCGAAC AAGATAGTGG TTTCCTACCT GAGTCTGTGC GTAGGCTTTT GTCTAAACAG
CTTGCGGAAG CGCAAGAAGC CGGTGATGTT GAGCACATCG AAGAGCTAGA ATCAGACTTT
GATGCAGAGA TCGTCATACA TCAGCCTTTC GGCGTGATCA ATGAAGGCGA AAAAGTACTG
ATCTTGGTGG ACGAAGCGCA CCGCACCCAG CGAGGCGGCA AAGACCGTCC AAGCCTTTCA
GATAACTTGT TTGATGCATT CCCGAACTCG ACCCGAGTGG CGTTTACAGG AACACCGCTC
ATCGCGGACC ACCATACTTA TCCAACCTGG AAGCGCTTTG GAGTCAATCA TGAAAAAGCC
TATATAGACA AGTACAAACT TCAGGATGCG GTCGATGATG GCGCGACGTT AAAAATTCTC
TACGAAGGTA AAACCGCAGA CAGTGCGATT TACGATAAAG CGGGGTTTGA TACCAAGTTT
GAAGATCTTT TTGCGGACAG AACGGAAGAA GAACTAAGAG AGATCCGTAA AAAGTATGGT
GCGGAAGGGG ATATTCTTGA GGCAGAAAAG CGCATTGAGG AAATTGCTGA GGACCTAGTA
AAGCACTACA CACGGCAGAT TTTTCCAGCA GGCTTTAAAG CGCAAGTAGT GTGTTCTTCC
AAGCAAGCAG CTATTCATTA CCAAACCTAT ATTGAAAAGG CACTGGCGAA AGAAATCGAG
TTATACAAAA AGCAGCCAGA GCAATGTATC GATAAAGCTT GGCTTGAGCG CCTTGAGTTT
TTGAAAACGG CGGTTGTGAT TTCAAGTGAT GACACCAATG AAGCAGCTTC TTTCACATAC
GCCAGAAAGC AGGCCAAAGA ATTAAAAGCT GTCGATAACT TCAAGAAGAA GTTTGATCAC
AGCAAGCCAA ATACCGGCGT CGCTTTCTTG ATTGTCTGCG ACATGCTGTT AACGGGCTTC
GATGCGCCAA TTGAACAGGT GATGTATCTC GACAAGAAAC TGCGAGAGCA TAATTTGCTG
CAAACCATTG CCCGTGTAAA CCGCACCGCG AAAGAGAAAA AACGTGGCTA TGTTGTCGAT
TATATTGGTC TTGCTCATCA CTTGAGAGAT GCGCTGTCGA TGTACTCTCA AGATGATCAA
AACGACATCA TGGAAAGTAT GCAGAGCATT GATAGCGAAG TGCCGGTGTT GGAAAGTCGT
TATCGCCGTA TGCTTCAGCT ATTTTCCGAA CTCGATGTTC ATAACATCGA AGCATTTGTG
AACCAGAAAC TTAGTGTGGA TGAGCACTAT CAAGTGCAAC TTCAGGCGAT TTCTGTTTTA
GAAGACCCTC GCCAGCGTGA CAGTTTCAAC GTGTTCTTGA AGAAGTTTCT TCAGAGCATG
GACATCATCA TGCCGAACTC CTTGGCAGAT CCTTACAAAA CGCCGATGTA CCAGTTTGTG
CATATTCAAG CGAAAGCGCG TCAACGTTAT CAAGATGACA GTATGAGTTT CCAAGGTGTG
GGTGCAAAGA TTCGCCATCT AGTAAATGAA CACCTGATTA GCCTTGGTAT TAACCCCAAA
GTTAAGCCTA TCGACTTGTT CAGTGATGCG TTTATGACCC ACATGGGAAA AGAGCCGGAC
TTACAAGCGC AAGCGAGTGA AATGGAACAC GCCATTCGTA AGCACTGCAA AGTCAATGCG
GATGATGACC CAGTTTTCCA CAAAAAAATG AGTGAGAAGC TGGATGAGAT AATCAAAAAG
CACTCTGGTA ACTGGGAAAA GATGATCCTA GAGCTAAGTG CTTTGCGAGA TGAAATCGAC
GCGGGGCGTG GTCCTAACTC TCAGGTATCC GACCCATTCT TTGATTTGAT TGTCAGTATT
GCATTCCCGG ATGGCGAGCC TGTTAAGCCT CTGGACAAGG TGAAAGCCTG TGTCGACGCC
ATTATGGAAG AGCTAGGCGA GAATATCAGT AGCCTAGACT TCTGGGAGCG TGAGGACTTA
GTGTCTGAGC TGAGAGGGCG CATCAAAAAG CGCTTTATTC TCAGCAAAGT GCCACAGCTT
AAAGACGCAC GTGAACAGCT AACTATTGAG GTAGTGGCGC TGGCGCGTAG ACGGGAGCAA
ATGCTCTTGT CGGATCATGA GCTGAACATC AAAATTGAAA GGCTCATTAA CGCCATAAAA
GAACTAAAGA TAACAGGTAC AGAGGAAGAC GATCGAAGAG TACTGGATAT GCTGAAATAT
TCGGTATGTG GCGCGGAGCT CTATTTAGCA AGCGAACTTG AACAATATGA GCAGTTTATC
CGTGTGGCTT CTGTGACTGT CAGAACGGAT ATCGACGTTC CCAATGCGCC TGAAGCCTGA
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| Protein sequence | MSEYQLVEKP LLNQLKSMGW DVMDLGQGVP TDPTTSFRGS FREVILKDIF KTAVHRINTT
DDGKPWLTDS QLDVLLDDVT DFGTHELLAA NEEFIGRLHK WQLDRNELTG EEDPVVKLID
FDNWKNNTFT AINQFRVDTP GLGKEHIRPD IVLFVNGLPL VVIECKVQSQ HCCNPMAAGI
DQLRRYADLR EPQHSKLREG EPALFFTNQL MISTYGDDCK VGTITSNEDY YFNWKTIYPD
TEPYIAPEIG THRIQEKLVQ GMLHPQRLLD ITRCFTLFMD TDNGPRVKVI CRYQQFRAVQ
KIIERMEQGE TGIQRSGVVW HTQGSGKSLT MVFLVRKLRR HPDLKSYKVL MVNDRNDLEE
QLTNTAALIG DKVVVIKNTR DAKAELANDT SNTNMVMVHK FREQDSGFLP ESVRRLLSKQ
LAEAQEAGDV EHIEELESDF DAEIVIHQPF GVINEGEKVL ILVDEAHRTQ RGGKDRPSLS
DNLFDAFPNS TRVAFTGTPL IADHHTYPTW KRFGVNHEKA YIDKYKLQDA VDDGATLKIL
YEGKTADSAI YDKAGFDTKF EDLFADRTEE ELREIRKKYG AEGDILEAEK RIEEIAEDLV
KHYTRQIFPA GFKAQVVCSS KQAAIHYQTY IEKALAKEIE LYKKQPEQCI DKAWLERLEF
LKTAVVISSD DTNEAASFTY ARKQAKELKA VDNFKKKFDH SKPNTGVAFL IVCDMLLTGF
DAPIEQVMYL DKKLREHNLL QTIARVNRTA KEKKRGYVVD YIGLAHHLRD ALSMYSQDDQ
NDIMESMQSI DSEVPVLESR YRRMLQLFSE LDVHNIEAFV NQKLSVDEHY QVQLQAISVL
EDPRQRDSFN VFLKKFLQSM DIIMPNSLAD PYKTPMYQFV HIQAKARQRY QDDSMSFQGV
GAKIRHLVNE HLISLGINPK VKPIDLFSDA FMTHMGKEPD LQAQASEMEH AIRKHCKVNA
DDDPVFHKKM SEKLDEIIKK HSGNWEKMIL ELSALRDEID AGRGPNSQVS DPFFDLIVSI
AFPDGEPVKP LDKVKACVDA IMEELGENIS SLDFWEREDL VSELRGRIKK RFILSKVPQL
KDAREQLTIE VVALARRREQ MLLSDHELNI KIERLINAIK ELKITGTEED DRRVLDMLKY
SVCGAELYLA SELEQYEQFI RVASVTVRTD IDVPNAPEA
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