Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_05361 |
Symbol | secD |
ID | 5556809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009784 |
Strand | + |
Start bp | 590412 |
End bp | 592250 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640909838 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001447493 |
Protein GI | 156976587 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAA CACCAAAACC ACAAAAGAAC AGAAAAGTGC TGAATCATTA CTCAGCATGG AAATACGTCG TACTTATTAC GACCGTTATT ATTTTAACCT TGAGCGCGAT CCCAACCTGG TTTGGTGAGC AGCCTTCTAT TCAGGTCACG TTTGCTGACC AAAGCAACAG TGCGATGTCA GTGGTCCAGC TAGACCAACT GTTGAAAACG CATCATATTC CTGCGTCTAA GATCATTGAG AAAGACGGAA AAACCACCAT CGTTTTTGAT GGCGAAGACG CGCAAAGTAA AGCACGCGCA TTGCTTAACG AGCAGCTAGA CAAAGACGAC AGCATTACGT TCTCTTACGT TTCTGTTGCA CCTGAATGGT TGAATGAAAT GGGCTTTAGC CCGATCAAAC TTGGTCTTGA CCTTCGTGGC GGCGTGCAAT TCCTACTAAA CGTAGATGTG AACAAAGCGT TCGAGGAACA ACGTGATGCA TTGGTTGATG AGATCAAAGC AAATCTGCGT GAAGAGCGTA TTCGCGGTGT TCAAGTTCGT GCAGAGGCGC ACAACCACAT CGCAGTAAAC AGCGAGAACG AAGCGGGTCT CAAAGCGGCA AGCCAATTCA TTCGTCAAAA CTACCCTGGT TGGACAATGA CTGGCTCAGA TCGCGGCTTT GAGCTTCAGC CAAGTGAACA GAACATCCAA GAATTCCAAA CCACAACACT TCAACAAAAC TTGAAGATCA TGCGTGGTCG TATCGAAGAG CTGGGTATTA CAGAAGCGTT GGTTCAACGC CAAGGCAAAG AGAGTATCCG TATTGAGCTT CCAGGTGTTC AAGATCCAGC ACAAGCGAAA AACGTTATCG GTGCAACAGC CAGCCTTGCG TTCTATGAAG TAAAAGACGC AGGTCAAGCT CGTAGTAGCC AAGACCTTGT ATTGAAAGAC AACGACGGTC GTACAGTAAT TCTGACTAAG CGCCCAGTAT TAACGGGTGA GCACATTGTA AACGCACGTG CTGGCGTCGA CAAAATGGGT ATGTCAGAAG TAAACATCTC TCTAGACCAC GCGGGTGGCA AGAAGATGAG TGACTTCTCT GCAACACACA TCGGCAAACC AATGGCGACC GTATACCGCG AGTACAAAAC GGACGAACGT GGTATGACAG AGCGTAGTGA GCGTGTCATC AGTGTAGCAA CTATCCAGTC TCAACTTGGT AGCCAATTCC GCATCACAGG TGCGGGTAGC ATGGATGAAG CACAACAGCT TGCGCTGCTT CTGCGTGCGG GCTCTCTAAC AGCGCCAGTG ACGATCGTTG AAGAACGTAC AATTGGTGCA TCTCTAGGTG CAGAAAACAT CCAAAACGGT TTTGCTGCTC TAGCACTAGG TATGGGTCTA ACCCTGACAT TTATGGCGCT TTGGTACCGT CGTCTTGGTT GGGTCGCGAA CGTGGCTTTG TGTGCAAACA TGCTTTGCTT GCTTGGTCTA ATCGCACTGC TTCCTGGCGC CGTGCTAACG CTTCCTGGTA TTGCTGGTTT GGTTCTGACT GTCGGTATGG CGGTGGATAC CAACGTGATT ATCTTTGAAC GCATCAAAGA CAAAATGCGT GAAGGCCGCA GCTTCGCTCA AGCGATCGAC CTCGGCTTCG ACAGTGCATT CGCAACTATC CTTGATGCCA ACATCACCAC CATGATCACT GCTGTGATTC TATACGCGAT TGGTAACGGT CCAATCCAAG GCTTCGCGCT AACGCTAGGC TTGGGTCTGA TGACCAGTAT GTTTACAGGC GTATTCGCTT CTCGTGCAAT GATCAATTTA ATTTGGGGCC GCGATGGCCG TCGTGATGTG AGGGTTTAA
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Protein sequence | MKKTPKPQKN RKVLNHYSAW KYVVLITTVI ILTLSAIPTW FGEQPSIQVT FADQSNSAMS VVQLDQLLKT HHIPASKIIE KDGKTTIVFD GEDAQSKARA LLNEQLDKDD SITFSYVSVA PEWLNEMGFS PIKLGLDLRG GVQFLLNVDV NKAFEEQRDA LVDEIKANLR EERIRGVQVR AEAHNHIAVN SENEAGLKAA SQFIRQNYPG WTMTGSDRGF ELQPSEQNIQ EFQTTTLQQN LKIMRGRIEE LGITEALVQR QGKESIRIEL PGVQDPAQAK NVIGATASLA FYEVKDAGQA RSSQDLVLKD NDGRTVILTK RPVLTGEHIV NARAGVDKMG MSEVNISLDH AGGKKMSDFS ATHIGKPMAT VYREYKTDER GMTERSERVI SVATIQSQLG SQFRITGAGS MDEAQQLALL LRAGSLTAPV TIVEERTIGA SLGAENIQNG FAALALGMGL TLTFMALWYR RLGWVANVAL CANMLCLLGL IALLPGAVLT LPGIAGLVLT VGMAVDTNVI IFERIKDKMR EGRSFAQAID LGFDSAFATI LDANITTMIT AVILYAIGNG PIQGFALTLG LGLMTSMFTG VFASRAMINL IWGRDGRRDV RV
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