| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_04951 |
|---|
| Symbol | |
|---|
| ID | 5558146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | - |
|---|
| Start bp | 210220 |
|---|
| End bp | 210948 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640909430 |
|---|
| Product | DNA-directed RNA polymerase sigma subunit/flagellum specific |
|---|
| Protein accession | YP_001447086 |
|---|
| Protein GI | 156976180 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGAGA TGAACTTACA GGAAAGTTAT ACCGCGACGG AGGAAGTAAA TACGCCGTCG
CGCCCGATTG ATGAAAATGC ACTGCTGCAA CGTCACCAAG TCATGGTTAA GCGCGTAGTA
AATCAACTGC GCGTTCATGC GACCTCGCAC TGCAGCATTG AAGACATGCA GCAAATCGGC
TTGATTGCGC TTGTCGAAGC TGGGCGTCGT TATGGGGATG TGGATGATCC ACACTTCCCC
GCTTTTGCCG TTTGTCGTGT TCGTGGCGCG ATTTTGGACG AGCTTCGTCG TTTGGATTGG
CGCTCACGCA AAACCCGCCA ACAGGCGCAT GAGCTTAACG ATGTGACACG AGATCTTACT
CGGGCGCTGG GCAGAATGCC CACCGATGCT GAAATCATCA AAGCGCTAGG TACGGATGAG
CAAGACTACT ATAACCGCCA AAACGCCGCA CTCGCTGGCG AAATGCAAAG CCTCGACCAA
TTGATGGAAA CTGGCGGAGA GAGCCACTTT GGCGGCCAAT ATGACGGCAT GGAACATGAG
CACATTCGCC GTAGCTTAGA CACTGCGCTG GGCAAAATGT CGAAACGTGA CCAACTGTTG
CTCACCTTGT TCTATCAACA TGAACTCAAC CTCCATGAAA TCGCGCTCGT GCTCGATCTG
ACACCACCTC GCATCTGTCA GTTGCACAAA CAAGCGCTTA AACAACTCAA CCAATTAATG
TCCTCTTAG
|
|---|
| Protein sequence | MLEMNLQESY TATEEVNTPS RPIDENALLQ RHQVMVKRVV NQLRVHATSH CSIEDMQQIG
LIALVEAGRR YGDVDDPHFP AFAVCRVRGA ILDELRRLDW RSRKTRQQAH ELNDVTRDLT
RALGRMPTDA EIIKALGTDE QDYYNRQNAA LAGEMQSLDQ LMETGGESHF GGQYDGMEHE
HIRRSLDTAL GKMSKRDQLL LTLFYQHELN LHEIALVLDL TPPRICQLHK QALKQLNQLM
SS
|
|---|
| |